TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Homo sapiens # Complete (499 letters) Database: S.arctica/genome.fa 15,618 sequences; 121,588,341 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value supercont1.675 of Sphaeroforma arctica JP610 90 1e-17 supercont1.1152 of Sphaeroforma arctica JP610 59 2e-08 supercont1.149 of Sphaeroforma arctica JP610 54 1e-06 supercont1.506 of Sphaeroforma arctica JP610 50 1e-05 >supercont1.675 of Sphaeroforma arctica JP610 Length = 50823 Score = 90.1 bits (222), Expect = 1e-17 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Frame = +1 Query: 8 PKSYDYDLIIIXXXXXXXXXXXXXXXXXXXVMVLDFVTPTPLGTRWGLGGTCVNVGCIPK 67 P YD D I+I V + D+V P+ GT+WGLGGTCVNVGC+PK Sbjct: 7489 PSQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPK 7668 Query: 68 KLMHQAALLGQALQDSRNYGWKVE-ETVKHDWDRM 101 K+MH A L + D++ GW+VE +++KHDW M Sbjct: 7669 KIMHYAGLQAINMHDAQALGWQVEADSIKHDWTSM 7773 Score = 89.4 bits (220), Expect = 2e-17 Identities = 46/112 (41%), Positives = 70/112 (62%) Frame = +2 Query: 151 IYSAERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLA 210 +YSA I T ++ P +SDD+FSL PG+TL VGASY++LEC GFL Sbjct: 10898 LYSA----IHTHASTNFISTPPPTRAIPTSDDIFSLYTSPGRTLCVGASYISLECGGFLK 11065 Query: 211 GIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAG 262 +G +V V +RSI LRGFD+ + K+ + M++ G+ F +Q+VP +++ +G Sbjct: 11066 ELGYEVDVAMRSIPLRGFDRQCSEKVADLMDKLGVTFHKQYVPSLIKKTSSG 11221 Score = 55.5 bits (132), Expect = 3e-07 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = +1 Query: 451 GFAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGAS-ILQAGCUG 499 G+A ALK G+TK D T+GIHP AE F L +T+RSG S + + GC G Sbjct: 15523 GYALALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG 15672 Score = 53.9 bits (128), Expect = 1e-06 Identities = 29/53 (54%), Positives = 33/53 (62%) Frame = +1 Query: 358 YAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLE 410 Y T + DY+ V T VFTP EYGA G SEE A+ FGE+ IEVY F LE Sbjct: 13834 YHTCTHQQDYKMVATAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLE 13992 Score = 53.9 bits (128), Expect = 1e-06 Identities = 22/36 (61%), Positives = 27/36 (75%) Frame = +3 Query: 421 CYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAAL 456 C AK++C +NERVVGFH +GPNAGE+TQG L Sbjct: 14745 CLAKLVCLKNENERVVGFHFIGPNAGEITQGTTLCL 14852 Score = 53.5 bits (127), Expect = 1e-06 Identities = 24/49 (48%), Positives = 37/49 (75%) Frame = +1 Query: 314 GKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGST 362 GK+ + T+V +IYAIGD +++ ELTPVA+QAG+ LA+R++ GS+ Sbjct: 12634 GKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSS 12780 Score = 52.8 bits (125), Expect = 2e-06 Identities = 22/38 (57%), Positives = 27/38 (71%) Frame = +1 Query: 101 MIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPH 138 ++E VQNH+GSLNWGY++ LR KV Y NA FI H Sbjct: 9637 LVETVQNHVGSLNWGYKLGLRSNKVNYINATAAFIDAH 9750 >supercont1.1152 of Sphaeroforma arctica JP610 Length = 21143 Score = 59.3 bits (142), Expect = 2e-08 Identities = 25/50 (50%), Positives = 34/50 (68%) Frame = +3 Query: 433 ERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL 482 E+VVG H++G A E+TQGF A+K G TKK D+++ IHP AE T+ Sbjct: 16719 EKVVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868 Score = 48.5 bits (114), Expect = 4e-05 Identities = 22/51 (43%), Positives = 33/51 (64%) Frame = +3 Query: 55 LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAV 105 +GGTCVNVGC+PKK+M AA + + D YG+ V + K DW +++ + Sbjct: 11124 IGGTCVNVGCVPKKVMFMAASHMEGIHDLPGYGFDV-DFKKFDWGCVVKFI 11273 >supercont1.149 of Sphaeroforma arctica JP610 Length = 132930 Score = 53.5 bits (127), Expect = 1e-06 Identities = 45/167 (26%), Positives = 76/167 (45%) Frame = +3 Query: 236 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA 295 + E+ GIK ++E+ E G +V N ++ + ++ +++A GR Sbjct: 90225 VTNQFEKEGIKLYLSSDYERIEKRE-GAEKETEIVLHMKNGDKFV---FDELLVAAGRVP 90392 Query: 296 CTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQ 355 + L+ GV ++KTG + V D QT IYA GDI K + T VA R++ + Sbjct: 90393 NVENLNLDVAGVDFDKKTGVV-VNDYLQTTNSNIYAAGDIC-FKYKFTHVADFLARIVVR 90566 Query: 356 RLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVY 402 K +P ++T E GL E+ A+ K G +++VY Sbjct: 90567 NALFFGKSKASDLLIPWAIYTEPEVAHVGLYEKDAIAKHG--SVDVY 90701 >supercont1.506 of Sphaeroforma arctica JP610 Length = 66308 Score = 50.1 bits (118), Expect = 1e-05 Identities = 37/136 (27%), Positives = 67/136 (49%) Frame = +1 Query: 241 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKI 300 E + IK I PI+ + + P + ++ +I+ E + +++++GR T + Sbjct: 59146 EPNSIKLI*NSTPIQSNRSKNSNPFHI-------STPNLIQLEADNLLVSVGRRPYTEGL 59304 Query: 301 GLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 360 GLE +G+ ++ GKIPV QT +YAIGD+++ + L A + + + G Sbjct: 59305 GLENIGLTDLDR-GKIPVDKYFQTKTEGVYAIGDVIDGPM-LAHKAEDEAFICVEGMLGG 59478 Query: 361 STVKCDYENVPTTVFT 376 DY VP+ V+T Sbjct: 59479 HP-HIDYNCVPSVVYT 59523 Database: S.arctica/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 121,588,341 Number of sequences in database: 15,618 Lambda K H 0.319 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,820,961 Number of Sequences: 15618 Number of extensions: 1087531 Number of successful extensions: 3813 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 733 Number of HSP's successfully gapped in prelim test: 156 Number of HSP's that attempted gapping in prelim test: 2762 Number of HSP's gapped (non-prelim): 1741 length of query: 499 length of database: 40,529,447 effective HSP length: 113 effective length of query: 386 effective length of database: 38,764,613 effective search space: 14963140618 effective search space used: 14963140618 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)