TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000034_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Homo sapiens # Complete
         (499 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig930  |  | 1 to 5584                                          219   5e-57
Lt_contig6308  |  | 1 to 4266                                         140   2e-33
Lt_contig1833  |  | 1 to 2042                                          86   5e-17
Lt_contig1476  |  | 1 to 6304                                          70   4e-12

>Lt_contig930  |  | 1 to 5584
          Length = 5584

 Score =  219 bits (557), Expect = 5e-57
 Identities = 146/433 (33%), Positives = 217/433 (50%), Gaps = 10/433 (2%)
 Frame = +2

Query: 55  LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV-EETVKHDWDRMIEAVQNHIGSLN 113
           LGGTCVNVGC+PKKLM   A     +++SR +GW+V  E+V+ +W  +I A    +G +N
Sbjct: 548 LGGTCVNVGCVPKKLMVTGAQYMDLIRESRGFGWEVNRESVRPNWKTLIAAKNKAVGDIN 727

Query: 114 WGYRVALREKK-VVYENAYGQFIGPHRIKATN----NKGKEKIYSAERFLIATGERPRYL 168
             Y     E + + +   +      H +        N    +    E  LIATG  P  L
Sbjct: 728 ESYTNMFAETEGLSFHMGFAALQDAHTVVVRKSEDPNSDVLETLDTEYILIATGSWPTRL 907

Query: 169 GIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAG---IGLDVTVMVR-SIL 224
           GIPGD E CI+S++ F L   P +TL VG  Y+A+E AG   G       V +  R  ++
Sbjct: 908 GIPGD-ELCITSNEAFYLEDVPKRTLCVGGGYIAVEFAGIFNGYKPCSGQVDLCYRGDLI 1084

Query: 225 LRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEY 284
           LRGFD  +   + + +E +GI+ + +   + +  I     G   V   +  +      +Y
Sbjct: 1085LRGFDTQVRQSLTQQLEANGIRILTK---LNLSSITKNEDGSKHVCFDNGTA-----ADY 1240

Query: 285 NTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTP 344
           + VMLAIGR   ++ + L+TVG+K   K G + V    +T+V  IYAIGD+  ++V LTP
Sbjct: 1241DEVMLAIGRVPRSQTLQLDTVGIK-TRKDGSVEVDAYSKTSVDNIYAIGDV-TNRVMLTP 1414

Query: 345 VAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHS 404
           VAI  G   A  ++ G     D+  V   VF+    G CG++EE+A + +    + VY S
Sbjct: 1415VAINEGAAFADTVFGGKPRATDHTKVACAVFSIPPIGTCGVTEEEAAKNY--STVAVYES 1588

Query: 405 YFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQ 464
            F PL   I      K   +I+ +    E V+G H+LG +A E+ Q     +K G     
Sbjct: 1589SFTPLMHNISGSTYKKFMIRIVTDHSSGE-VLGVHMLGDSAPEIIQSVGICMKMGAKISD 1765

Query: 465 LDSTIGIHPVCAE 477
              TIG+HP  AE
Sbjct: 1766FHDTIGVHPTSAE 1804


>Lt_contig6308  |  | 1 to 4266
          Length = 4266

 Score =  140 bits (353), Expect = 2e-33
 Identities = 108/429 (25%), Positives = 193/429 (44%), Gaps = 3/429 (0%)
 Frame = +3

Query: 52   RWGLGGTCVNVGCIPKK-LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIG 110
            R  LGGTC+NVGCIP K L+H   L   A  +   YG +  E V  D   M       + 
Sbjct: 2421 RGALGGTCLNVGCIPSKALLHATHLYHDAHANFAQYGLRGGENVTMDVLAMQAQKTKGVK 2600

Query: 111  SLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLG- 169
            +L  G     ++ KV Y    G F+  + IK     GKE+   +++ ++ATG  P  L  
Sbjct: 2601 ALTGGVEYLFKKNKVTYYKGEGSFVSANTIKVKGLDGKEETLESKKTIVATGSEPTELPF 2780

Query: 170  IPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGF 228
            +P D++  +SS     L + P K +V+G   + LE     A +G +VTV+   S      
Sbjct: 2781 LPFDEKVVLSSTGALDLDHVPKKMIVIGGGVIGLELGSVWARLGSEVTVVEFASRCAATT 2960

Query: 229  DQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVM 288
            D D++  + + + +H     +  +    + +     GR   +       +    E + ++
Sbjct: 2961 DADVSKALTDALVKHE----KMKIMTNTKVVSGKNNGRSVTIEVEGKDGQHQTLEADALL 3128

Query: 289  LAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQ 348
             ++GR   T  +  E + +K+  + G I + D  +TNVP +YAIGD++     L   A +
Sbjct: 3129 CSVGRRPHTTGLNAEAINLKM--ERGFICINDHFETNVPNVYAIGDVVNKGPMLAHKAEE 3302

Query: 349  AGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWP 408
             G   A+ L AG     +Y  +P  ++T  E    G +EE+  ++  +  +  +      
Sbjct: 3303 EGVACAE-LLAGKPGHVNYNVIPGVIYTNPEVAQVGETEEQVKKRGVDYKVGKFPFSANS 3479

Query: 409  LEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDST 468
                + + D    + K++ + K  +R++G  ++   AGE+      A++ G + + +  T
Sbjct: 3480 RAKAVGTEDG---FVKVVTD-KKTDRILGVQIVCTAAGEMIAEPTLAMEYGASSEDVGRT 3647

Query: 469  IGIHPVCAE 477
               HP  +E
Sbjct: 3648 CHAHPTMSE 3674


>Lt_contig1833  |  | 1 to 2042
          Length = 2042

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 98/435 (22%), Positives = 183/435 (42%), Gaps = 10/435 (2%)
 Frame = +1

Query: 55  LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGW--KVEETVKHDWDRMIEAVQNHIGSL 112
           +GG     G +  K + + A   +    + ++ +   V E  K     +I+A+ N   + 
Sbjct: 226 IGGADFWNGALQSKTLWEMAKFARYTMGNTSHRFMKSVGELPKIQHSNLIKAITNAAETR 405

Query: 113 NWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR-YLGIP 171
                  L    +     +G F  P+ +    N G E+   A+ F+IATG  PR +    
Sbjct: 406 ETQTLQDLANADIEVLFGFGSFRTPNCVAVAKNDGTEENVEADYFVIATGAHPRPHPTAV 585

Query: 172 GDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIG-LDVTVMVRS-ILLRGFD 229
            D +   +SDD+   P  P   +V+GA  V  E A   A  G   V ++ +S  +L   D
Sbjct: 586 ADGKVVFTSDDIMMQPL-PKSIVVIGAGVVGCEFASIFANFGETQVNIIEKSGRILPMED 762

Query: 230 QDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVML 289
           +D+A  +   +E+ G++F      ++  +I     G+     +      + +   ++ ++
Sbjct: 763 EDIALFVQALLEQKGVRF-HHHSSMESSRIN---DGKFHYTLRDLRDNSLHQHVTDSALV 930

Query: 290 AIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVP--YIYAIGDILEDKVELTPVAI 347
           +IGR     K+ LE +GV++  K  +I   D+     P  +IYA GD    +V L  VA 
Sbjct: 931 SIGRVPAISKLNLEAIGVEV--KNNRIN-RDDFLRIAPHKHIYACGDTC-TRVALVNVAE 1098

Query: 348 QAGRLLAQRLYAG---STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHS 404
             GR     +Y       +K    N+ T +F   E  A GL+E++  +K         +S
Sbjct: 1099LEGRACINHMYTSYPEEQLKLTLNNLSTIMFLDQEVAAVGLNEQQC-QKMSISYKMARYS 1275

Query: 405 YFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQ 464
           Y +       +  N + + K++       +V+G   +GP+A  + +  + A+    +   
Sbjct: 1276YEY--VGRALAMGNTRGFIKLVVTNDKKMQVLGVRAVGPHASSIIELASLAIHNRDSAYD 1449

Query: 465 LDSTIGIHPVCAEVF 479
           L +   ++P   + F
Sbjct: 1450LRNLHAVYPAITQGF 1494


>Lt_contig1476  |  | 1 to 6304
          Length = 6304

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 99/452 (21%), Positives = 186/452 (41%), Gaps = 27/452 (5%)
 Frame = +1

Query: 55   LGGTCVNVGCIPKKLMHQ-----AALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHI 109
            LGG  +  G +  K M +     A L G+A    R YG  ++  ++ D  +M ++++   
Sbjct: 2458 LGGNDLWDGALQSKTMWEYSSIMAKLRGEAAM--RLYGETLDGYLEIDEAKMRQSMETVS 2631

Query: 110  GSLNWGYRVALREKKVVYENAYGQ--FIGPHRIKATNNKGKE-KIYSAERFLIATGERPR 166
                   + AL     V E  +G+  F   H I+  N + KE +  +A+ F+IATG +PR
Sbjct: 2632 RLREEQMKTALTASPNV-ELMFGRATFNSNHEIQCHNKRTKELRSITADYFIIATGSKPR 2808

Query: 167  -YLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI-- 223
             +  +  D +  ++SD +   P  P   ++VGA  +  E A  +  +G     ++     
Sbjct: 2809 QHPYVAADGKLVMTSDHIMKAP-LPKSLVIVGAGVIGCEFASIIGRLGKTKVSIIDKAPH 2985

Query: 224  LLRGFDQDMANKIGEHMEEHGI-----KFIRQFVPIKVEQIEA--------GTPGRLRVV 270
            +L   D D+   I + M+  GI       +    P +  + EA             ++  
Sbjct: 2986 ILPREDPDIVRVIEDGMDRAGIVVHHNSDLYDMQPWEETEAEAKARHPADPAPQSGVQYT 3165

Query: 271  AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQ-TNVPYI 329
                 + ++   +    +++IGR     ++G+E   +K   +  ++ V +  Q    P+I
Sbjct: 3166 VMDRTTRKLTTFQVERALISIGRVPDYSRLGIENTTLK--TRGSQLHVNEFGQCVGTPHI 3339

Query: 330  YAIGDILEDKVELTPVAIQAGRLLAQRLYA--GSTVKCDYENVPTTVFTPLEYGACGLSE 387
            +A+GD     ++L  +     +L    +Y      V    E + +  F      + G +E
Sbjct: 3340 FAVGD-AATHMQLVSMGEAQAKLAVDYIYGTEPKVVPNLMETMSSVAFLTHAVASVGYNE 3516

Query: 388  EKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGE 447
             +  +K G   I   +SY   +     +  N K + KIIC      R++G   LG NA  
Sbjct: 3517 SQC-QKKGIAYIAARYSY--EVVSRAVAAANTKGFVKIICADDPELRILGVRALGMNAST 3687

Query: 448  VTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 479
            +    A A++   T   L   +  +P  ++ F
Sbjct: 3688 LVDIGALAIQNRQTVFDLAGRLTAYPAVSQAF 3783


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.319    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,665,469
Number of Sequences: 7267
Number of extensions: 300670
Number of successful extensions: 1358
Number of sequences better than 1.0e-04: 4
Number of HSP's better than  0.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 687
length of query: 499
length of database: 10,532,946
effective HSP length: 104
effective length of query: 395
effective length of database: 9,777,178
effective search space: 3861985310
effective search space used: 3861985310
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)