TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000063_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Caenorhabditis elegans # Complete (667 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 211 1e-54 T.congo.pschr.11 132 6e-31 T.congo.pschr4 82 1e-15 T.congo.pschr.8 81 2e-15 >TcIL3000_10_v2.embl Length = 3612457 Score = 211 bits (537), Expect = 1e-54 Identities = 152/488 (31%), Positives = 243/488 (49%), Gaps = 11/488 (2%) Frame = -1 Query: 173 YDLIVIGGGSGGLAAAKEASRLGKK-VACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMH 231 +DL++IG GSGGL A A+ L KK VA +D LGGTCVNVGC+PKKLM Sbjct: 2273023 FDLVIIGAGSGGLEAGWNAATLYKKRVAVVDVQTVHGPPFFAALGGTCVNVGCVPKKLMV 2272844 Query: 232 QASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLRE-KTVTYIN 290 + + ++ +GW+ ++ W L + + +N Y ++ + + + Sbjct: 2272843 TGAQYMDQLRESAGFGWEFDASTIKANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFL 2272664 Query: 291 SYGEFTGPFEIS----ATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITSDDLFQ 346 +G ++ A K K E+L A+ +I+TG P+ +IPG+ E+ I+S++ F Sbjct: 2272663 GWGALEQKNVVTVREGADPKSKVKERLQAEHIIIATGSWPQMLKIPGI-EHCISSNEAFY 2272487 Query: 347 LPYSPGKTLCVGASYVSLECAGFLHGF---GFDVTVMVR-SILLRGFDQDMAERIRKHMI 402 L P + L VG ++S+E AG + + G VT+ R + +LRGFD + E + K ++ Sbjct: 2272486 LEEPPRRVLTVGGGFISVEFAGIFNAYKPVGGKVTLCYRNNPILRGFDYTLREELTKQLV 2272307 Query: 403 AYGMKFEAGV-PTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGRE 461 A G+ P++IE + K+ F E+G+ +V + ++MAIGR Sbjct: 2272306 ANGIDIMTNENPSKIE-----LNPDGSKHVTF------ESGKTLDV----DVVMMAIGRL 2272172 Query: 462 AVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMR 521 T D+ L T+GV + T +P +YAIGDV G LTPVAI G ++ Sbjct: 2272171 PRTGDLQLQTVGVNLTDKGAIQVDEFSRTNVPNIYAIGDV-TGRIMLTPVAINEGASVVD 2271995 Query: 522 RIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISE 581 IF T++ ++ + VF+ G CGL+EE+A + K + +Y + F PL + IS Sbjct: 2271994 TIFGSKPRKTDHTRVASAVFSIPPIGTCGLTEEEAAKSFEK--VAVYLSCFTPLMHNISG 2271821 Query: 582 RMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPT 641 K ++ I + + VVG H+L ++ E+ Q GI DF IG+HPT Sbjct: 2271820 SKYKK--FVAKIITDHGDGTVVGVHLLGDSSPEIIQAVGICMKLNAKISDFYNTIGVHPT 2271647 Query: 642 VAENFTTL 649 AE ++ Sbjct: 2271646 SAEELCSM 2271623 >T.congo.pschr.11 Length = 4797796 Score = 132 bits (332), Expect = 6e-31 Identities = 128/488 (26%), Positives = 198/488 (40%), Gaps = 11/488 (2%) Frame = -2 Query: 168 LRDHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPK 227 LR + YD++V+GGG GG AA +A++LG K AC++ LGGTC+NVGCIP Sbjct: 4689213 LRLNPYDVVVVGGGPGGYVAAIKAAQLGLKTACVE--------KRGALGGTCLNVGCIPS 4689058 Query: 228 KLMHQASLLGHSIH-DAKKYGWKLPEGK-VEHQWNHLRDSVQDHIASLNWGYRVQLREKT 285 K + A+ L H H + ++YG L GK V + ++ + + L G L++ Sbjct: 4689057 KALLHATHLYHDAHANFERYG--LVGGKNVTMDVSKMQQQKESAVKGLTGGVEYLLKKNK 4688884 Query: 286 VTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRP-KYPEIPGVKEYTITSDDL 344 VTY F P ++ K EKL +I+TG P P +P ++ ++S Sbjct: 4688883 VTYYKGEAGFLTPNTLNVKGLDGKDEKLEVKNTIIATGSEPTALPFLPFDEKVVLSSTGA 4688704 Query: 345 FQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVM-VRSILLRGFDQDMAE-------R 396 L P K + +G + LE G +VTV+ D D+ + + Sbjct: 4688703 LALQRVPKKMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDADVTDVLVGALKK 4688524 Query: 397 IRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILM 456 K K AGV + + +D + ++ GK + +L+ Sbjct: 4688523 NEKMKFMTNTKVVAGV-NKGDSVDLEVEQAGGKRETL----------------HCDALLV 4688395 Query: 457 AIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAG 516 ++GR T +GL I V + V T + VYAIGDV++ P L A G Sbjct: 4688394 SVGRRPYTAGLGLDKINVATNERGFVKIGSHFETNVAGVYAIGDVVDKGPMLAHKAEDEG 4688215 Query: 517 RVLMRRIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLE 576 V I G YD IP ++T E G ED + K G + Y P Sbjct: 4688214 -VACAEILAGRPGHVNYDVIPGVIYTMPEVASVG-KTEDELKKAG----VAYKVGKFPFN 4688053 Query: 577 YTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLI 636 + + ++++G HI+ AGE+ + D R Sbjct: 4688052 ANSRAKAVAIEDGFVKVLTDKATDRILGVHIVCSAAGELIAEACLAMEYGASSEDVGRTC 4687873 Query: 637 GIHPTVAE 644 HPT++E Sbjct: 4687872 HAHPTMSE 4687849 >T.congo.pschr4 Length = 1343510 Score = 81.6 bits (200), Expect = 1e-15 Identities = 110/494 (22%), Positives = 196/494 (39%), Gaps = 20/494 (4%) Frame = -3 Query: 173 YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLM-- 230 +D+ VIG G G+AAA A K+V ++ + +GG + G + K + Sbjct: 1341024 FDVCVIGAGPAGIAAALRAVDYSKRVCLVEAKR---------IGGCDLWNGALQSKTLWE 1340872 Query: 231 ---HQASLLGHS---IHDAKKYG---WKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQL 281 + +SL G + + D G KL +V H N + + L L Sbjct: 1340871 MSKYVSSLSGKAAQRVFDEATIGEIQRKLDLSRVRHALNEVSSVRETQTMEL-------L 1340713 Query: 282 REKTVTYINSYGEFTGPFEISA-TNKKKKVEKLTADRFLISTGLRPKYPEIPGV-KEYTI 339 R VT + F+ P E+ + + LTAD F+I+TG P+ E V + Sbjct: 1340712 RAAGVTTVFGKAMFSSPHELDVHSPSTNEYHVLTADYFIIATGSVPRQHEFVTVDHRRVV 1340533 Query: 340 TSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFG-FDVTVMVRS-ILLRGFDQDMAERI 397 T+D + QLP P + +GA V E A FG +VT++ ++ +L D+D+A + Sbjct: 1340532 TTDTIMQLPI-PSSLVIIGAGAVGCEFASIYANFGRTEVTIIDKARRILPKEDEDIANFV 1340356 Query: 398 RKHMIAYGMKFEAGVPTRIEQIDEKTDEKAG-KYRVFWPKKNEETGEMQEVSEEYNTILM 456 +H+ G++ + E+++E G Y V K + E + E L+ Sbjct: 1340355 EEHLAKRGVRIHHTCTLFDLESWEESEEIGGCVYSVRHDNKTDSHNEALVETYEAERALV 1340176 Query: 457 AIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAG 516 ++GR +GL + + L + +YA+GD L + G Sbjct: 1340175 SLGRVPNLSGLGLENTACKVTGGQVALDVFGRCVPYEHIYAVGDA-SADRGLVNLGEAQG 1339999 Query: 517 RVLMRRIFDGANELTEYDQIPTTVFTPL----EYGCCGLSEEDAMMKYGKDNIIIYHNVF 572 R + I+ + + T + T L E C GL+EE G I+ F Sbjct: 1339998 RGAVDHIYSERPQRPVNSSLLTNLSTILFLEEEMACVGLNEEHC-RALGIGYIVAR---F 1339831 Query: 573 NPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDF 632 + + + M + K++ + E++++G + +AG + + + Sbjct: 1339830 DYSHLSRAVAMGGAQGFCKVVATNDREKRLLGVRAVGAHAGSIVEVASLAIRQSDSAYSL 1339651 Query: 633 DRLIGIHPTVAENF 646 +L +P V + F Sbjct: 1339650 LKLTAAYPAVVQGF 1339609 Score = 57.8 bits (138), Expect = 2e-08 Identities = 100/507 (19%), Positives = 193/507 (38%), Gaps = 24/507 (4%) Frame = -3 Query: 164 LKEW--LRDHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVN 221 L +W L +D+ VIG G G+AAA A K+V ++ + +GG + Sbjct: 1343154 LAQWKSLGKSHFDVCVIGAGPAGIAAALRAVDYNKRVCLVEAKR---------IGGCDLW 1343002 Query: 222 VGCIPKKLMHQAS--LLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRV 279 G + K + + S L + A++ +E +R ++Q+ + Sbjct: 1343001 NGTLQSKTLWEMSNFLARANGSCARRVYDTTISSFMELDEERMRQTLQEVSETRETQILS 1342822 Query: 280 QLREKTVTYINSYGEFTGPFEISATNKK-KKVEKLTADRFLISTGLRP-KYPEIPGVKEY 337 L V + F E+ +++ K+ +TAD F+I+TG P P IP ++ Sbjct: 1342821 ALHASNVALLYGRAAFASSHELEVCSREAKEYRTVTADYFIIATGSVPVTQPHIPVDHKH 1342642 Query: 338 TITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMV--RSILLRGFDQDMAE 395 +TSDDL LP P + VG + E A G ++ + ++ D D+AE Sbjct: 1342641 VVTSDDLMMLPL-PKSMVVVGGGALGSEFAATYARLGKTKVYLLDKKERIMPKEDDDVAE 1342465 Query: 396 RIRKHMIAYGMKFEA-----GVPTRIEQIDEKTDEKAG---KYRVFWPKKNEETGEMQEV 447 I++ M G+ + + ++ D + G V + + +T E+Q Sbjct: 1342464 TIQRGMEKNGVVVHQDCLLYSMHSPLQNNDWAMEGNNGGDHHPTVRYTIMHRKTHELQ-- 1342291 Query: 448 SEEYNTILMAIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPE 507 + E L+ GR +GL E VL Q +YA+GD + Sbjct: 1342290 TYEVERALVVTGRRPNYFGLGLRNTKCEVRGGSLVLNAFGQCVNQKHIYAVGDATDNDRS 1342111 Query: 508 LTPVAIQAGRVLMRRIFDGANELTEYDQIPTTVFTPLEYGCCGLSEED--------AMMK 559 ++ + GR+ + I+ + VF G +E+ + K Sbjct: 1342110 VS-MGEAKGRLAVDHIYSPHVTEPLHPDHSRIVFLDTAVAAVGKNEKQCREQNISYVVAK 1341934 Query: 560 YGKDNIIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGF 619 YG + + NV ++K++ + ++ ++G H++ +A + + Sbjct: 1341933 YGFE--LCSRNV----------AASNTEGFVKILASNDSKKTLLGVHVVGWSASTIVEFA 1341790 Query: 620 GIXXXXXXXXXDFDRLIGIHPTVAENF 646 + ++ +P+V++ F Sbjct: 1341789 TAAIQRKQSAYELSEMLTAYPSVSQAF 1341709 >T.congo.pschr.8 Length = 2451971 Score = 81.3 bits (199), Expect = 2e-15 Identities = 110/494 (22%), Positives = 196/494 (39%), Gaps = 20/494 (4%) Frame = +1 Query: 173 YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLM-- 230 +D+ VIG G G+AAA A K+V ++ + +GG + G + K + Sbjct: 2090026 FDVCVIGAGPAGIAAALRAVDYNKRVCLVEAKR---------IGGCDLWNGALQSKTLWE 2090178 Query: 231 ---HQASLLGHS---IHDAKKYG---WKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQL 281 + +SL G + + D G KL +V H N + + L L Sbjct: 2090179 MSKYVSSLSGKAAQRVFDEATIGEIQRKLDLSRVRHALNEVSSVRETQTMEL-------L 2090337 Query: 282 REKTVTYINSYGEFTGPFEISA-TNKKKKVEKLTADRFLISTGLRPKYPEIPGV-KEYTI 339 R VT + F+ P E+ + + LTAD F+I+TG P+ E V + Sbjct: 2090338 RAAGVTTVFGKAMFSSPHELDVHSPSTNEYHVLTADYFIIATGSVPRQHEFVTVDHRRVV 2090517 Query: 340 TSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFG-FDVTVMVRS-ILLRGFDQDMAERI 397 T+D + QLP P + +GA V E A FG +VT++ ++ +L D+D+A + Sbjct: 2090518 TTDTIMQLPI-PSSLVIIGAGAVGCEFASIYANFGRTEVTIIDKARRILPKEDEDIANFV 2090694 Query: 398 RKHMIAYGMKFEAGVPTRIEQIDEKTDEKAG-KYRVFWPKKNEETGEMQEVSEEYNTILM 456 +H+ G++ + E+++E G Y V K + E + E L+ Sbjct: 2090695 EEHLAKRGVRIHHTCTLFDLESWEESEEIGGCVYSVRHDNKTDSHNEALVETYEAERALV 2090874 Query: 457 AIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAG 516 ++GR +GL + + L + +YA+GD L + G Sbjct: 2090875 SLGRVPNLSGLGLENTACKVTGGQVALDVFGRCVPYEHIYAVGDA-SADRGLVNLGEAQG 2091051 Query: 517 RVLMRRIFDGANELTEYDQIPTTVFTPL----EYGCCGLSEEDAMMKYGKDNIIIYHNVF 572 R + I+ + + T + T L E C GL+EE G I+ F Sbjct: 2091052 RGAVDHIYSERPQRPVNSSLLTNLSTILFLEEEMACVGLNEEHC-RALGIGYIVAR---F 2091219 Query: 573 NPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDF 632 + + + M + K++ + E++++G + +AG + + + Sbjct: 2091220 DYSHLSRAVAMGGAQGFCKVVVTNDREKRLLGVRAVGAHAGSIVEVASLAIRQSDSAYSL 2091399 Query: 633 DRLIGIHPTVAENF 646 +L +P V + F Sbjct: 2091400 LKLTAAYPAVVQGF 2091441 Score = 60.5 bits (145), Expect = 3e-09 Identities = 101/507 (19%), Positives = 194/507 (38%), Gaps = 24/507 (4%) Frame = +1 Query: 164 LKEW--LRDHTYDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVN 221 L +W L +D+ VIG G G+AAA A K+V ++ + +GG + Sbjct: 2087896 LAQWKSLGKSHFDVCVIGAGPAGIAAALRAVDYNKRVCLVEAKR---------IGGCDLW 2088048 Query: 222 VGCIPKKLMHQAS--LLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRV 279 G + K + + S L + A++ +E +R ++Q+ + Sbjct: 2088049 NGTLQSKTLWEMSNFLARANGSCARRVYDTTISSFMELDEERMRQTLQEVSETRETQILS 2088228 Query: 280 QLREKTVTYINSYGEFTGPFEISATNKK-KKVEKLTADRFLISTGLRP-KYPEIPGVKEY 337 L V + F P E+ +++ K+ +TAD F+I+TG P P IP ++ Sbjct: 2088229 ALHASNVALLYGRAAFASPHELEVCSREAKEYRTVTADYFIIATGSVPVTQPHIPVDHKH 2088408 Query: 338 TITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMV--RSILLRGFDQDMAE 395 +TSDDL LP P + VG + E A G ++ + ++ D D+AE Sbjct: 2088409 VVTSDDLMMLPL-PKSMVVVGGGALGSEFAATYARLGKTKVYLLDKKERIMPKEDDDVAE 2088585 Query: 396 RIRKHMIAYGMKFEA-----GVPTRIEQIDEKTDEKAG---KYRVFWPKKNEETGEMQEV 447 I++ M G+ + + ++ D + G V + + +T E+Q Sbjct: 2088586 TIQRGMEKNGVVVHQDCLLYSIHSPLQNNDWVMEGNNGGDHHPTVRYIIMHRKTHELQ-- 2088759 Query: 448 SEEYNTILMAIGREAVTDDVGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPE 507 + E L+ GR +GL E VL Q +YA+GD + Sbjct: 2088760 TYEVERALIVTGRRPNYFGLGLRNTKCEVRGGSLVLNAFGQCVNQKHIYAVGDATDNDRS 2088939 Query: 508 LTPVAIQAGRVLMRRIFDGANELTEYDQIPTTVFTPLEYGCCGLSEED--------AMMK 559 ++ + GR+ + I+ + VF G +E+ + K Sbjct: 2088940 VS-MGEAKGRLAVDHIYSPHVTEPLHPDHSRIVFLDTAVAAVGKNEKQCREQNISYVVAK 2089116 Query: 560 YGKDNIIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGF 619 YG + + NV ++K++ + ++ ++G H++ +A + + Sbjct: 2089117 YGFE--LCSRNV----------AASNTEGFVKILASNDSKKTLLGVHVVGWSASTIVEFA 2089260 Query: 620 GIXXXXXXXXXDFDRLIGIHPTVAENF 646 + ++ +P+V++ F Sbjct: 2089261 TAAIQRKQSAYELSEMLTAYPSVSQAF 2089341 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.317 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,113,464 Number of Sequences: 11 Number of extensions: 236228 Number of successful extensions: 1022 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 887 Number of HSP's gapped (non-prelim): 426 length of query: 667 length of database: 7,429,315 effective HSP length: 104 effective length of query: 563 effective length of database: 7,428,171 effective search space: 4182060273 effective search space used: 4182060273 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 106 (45.4 bits)