TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000063_1.0 # Protein # Thioredoxin reductase 1 (TR1) #
Caenorhabditis elegans # Complete
         (667 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.675 of Sphaeroforma arctica JP610                          129   3e-29
supercont1.1152 of Sphaeroforma arctica JP610                          70   1e-11
supercont1.506 of Sphaeroforma arctica JP610                           61   9e-09

>supercont1.675 of Sphaeroforma arctica JP610
          Length = 50823

 Score =  129 bits (324), Expect = 3e-29
 Identities = 61/117 (52%), Positives = 78/117 (66%), Gaps = 9/117 (7%)
 Frame = +1

Query: 155  ELKALKQDYLKEWLRDHTYDL---------IVIGGGSGGLAAAKEASRLGKKVACLDFVK 205
            +L  LK    K   R HT+D+         IVIGGGSGG+AAAKEA++ G KVA  D+VK
Sbjct: 7423 QLSTLKHPVPKLTTRTHTFDMAPSQYDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVK 7602

Query: 206  PSPQGTSWGLGGTCVNVGCIPKKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHL 262
            PS QGT WGLGGTCVNVGC+PKK+MH A L   ++HDA+  GW++    ++H W  +
Sbjct: 7603 PSTQGTQWGLGGTCVNVGCVPKKIMHYAGLQAINMHDAQALGWQVEADSIKHDWTSM 7773



 Score = 83.2 bits (204), Expect = 2e-15
 Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
 Frame = +2

Query: 340   TSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSILLRGFDQDMAERIRK 399
             TSDD+F L  SPG+TLCVGASY+SLEC GFL   G++V V +RSI LRGFD+  +E++  
Sbjct: 10970 TSDDIFSLYTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPLRGFDRQCSEKVAD 11149

Query: 400   HMIAYGMKF-EAGVPTRIEQIDEKTDEKAGKYRVFW 434
              M   G+ F +  VP+ I++        +GK  V W
Sbjct: 11150 LMDKLGVTFHKQYVPSLIKK------TSSGKVVVEW 11239



 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 27/33 (81%)
 Frame = +3

Query: 586   DHCYLKMICLRNEEEKVVGFHILTPNAGEVTQG 618
             D C  K++CL+NE E+VVGFH + PNAGE+TQG
Sbjct: 14739 DTCLAKLVCLKNENERVVGFHFIGPNAGEITQG 14837



 Score = 50.8 bits (120), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 37/60 (61%)
 Frame = +1

Query: 470   TTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFDGANE 529
             T  G+    + K+       T++  +YAIGD  +  PELTPVA+QAG+ L RR+F G+++
Sbjct: 12604 TAAGLSALPNGKLATDYADVTSVSHIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSK 12783



 Score = 48.5 bits (114), Expect = 6e-05
 Identities = 22/45 (48%), Positives = 28/45 (62%)
 Frame = +1

Query: 532   EYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLE 576
             +Y  + T VFTP EYG  G SEEDA+  +G+D I +Y   F  LE
Sbjct: 13858 DYKMVATAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLE 13992


>supercont1.1152 of Sphaeroforma arctica JP610
          Length = 21143

 Score = 70.5 bits (171), Expect = 1e-11
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
 Frame = +3

Query: 173   YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWG--LGGTCVNVGCIPKKLM 230
             YDL+VIGGGSGG+A A+  +  G KV           G + G  +GGTCVNVGC+PKK+M
Sbjct: 11025 YDLLVIGGGSGGIATARRCAEYGAKV-----------GVAVGGVIGGTCVNVGCVPKKVM 11171

Query: 231   HQASLLGHSIHDAKKYGWKLPEGKVEH----QWNHLRDSVQDHI 270
               A+     IHD   YG+ +   K +     ++ H + S+ D I
Sbjct: 11172 FMAASHMEGIHDLPGYGFDVDFKKFDWGCVVKFIHFKYSIYDII 11303



 Score = 53.9 bits (128), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 30/51 (58%)
 Frame = +3

Query: 599   EEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTVAENFTTL 649
             EEKVVG HI+   A E+TQGFG+         DFD  + IHPT AE   T+
Sbjct: 16716 EEKVVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868


>supercont1.506 of Sphaeroforma arctica JP610
          Length = 66308

 Score = 61.2 bits (147), Expect = 9e-09
 Identities = 31/66 (46%), Positives = 42/66 (63%)
 Frame = +1

Query: 173   YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 232
             YDL+VIGGG GG   A +A+++G KVAC++            LGGTC+NVGC+P K +  
Sbjct: 54961 YDLVVIGGGPGGYIGAIKAAQMGMKVACVE--------GRGRLGGTCLNVGCMPSKALLN 55116

Query: 233   ASLLGH 238
             +S L H
Sbjct: 55117 SSHLYH 55134


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.317    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,042,204
Number of Sequences: 15618
Number of extensions: 1265914
Number of successful extensions: 4703
Number of sequences better than 1.0e-04: 3
Number of HSP's better than  0.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 3587
Number of HSP's gapped (non-prelim): 1907
length of query: 667
length of database: 40,529,447
effective HSP length: 116
effective length of query: 551
effective length of database: 38,717,759
effective search space: 21333485209
effective search space used: 21333485209
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)