TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000063_1.0 # Protein # Thioredoxin reductase 1 (TR1) # Caenorhabditis elegans # Complete (667 letters) Database: G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.266... 370 e-102 gi|338240660|gb|AFNH01002836.1| Gregarina niphandrodes asmbl.354... 152 4e-37 gi|338242696|gb|AFNH01001817.1| Gregarina niphandrodes asmbl.260... 124 1e-28 >gi|338242564|gb|AFNH01001883.1| Gregarina niphandrodes asmbl.2669, whole genome shotgun sequence Length = 19534 Score = 370 bits (949), Expect = e-102 Identities = 231/573 (40%), Positives = 307/573 (53%), Gaps = 79/573 (13%) Frame = +1 Query: 174 DLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQA 233 DL+VIGGGSGGLAAAKEA+RLG KV C D+V+PSPQG+ WGLGGTCVNVGCIPK +MH + Sbjct: 12463 DLVVIGGGSGGLAAAKEAARLGAKVVCFDYVEPSPQGSKWGLGGTCVNVGCIPKIIMHNS 12642 Query: 234 SLLGHSI-HDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSY 292 + LG + H A GW +G + W L +VQ +I LN+ YR LR V YIN+ Sbjct: 12643 AKLGQLMDHSAAPLGWSGTDG-LTFVWQDLVKTVQLYIKQLNFSYRRGLRSAGVEYINAK 12819 Query: 293 GEFTGPFEISATNKKK----------KVEKLTADRFLISTGLRPKYP-EIPGVKEYTITS 341 E + + K + +++ A L++ G RP P ++PG E +TS Sbjct: 12820 ATLLAAPERAQSGAKSGRVVEYTLKGERKEVRAKCVLVAVGGRPYIPRDVPGAVELAVTS 12999 Query: 342 DDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSILLRGFDQDMAERIRKHM 401 DDLF L P KTL VGASY++LECAGFL +DVTV VRSI+LRGFD+ AE I+ M Sbjct: 13000 DDLFSLSREPKKTLVVGASYIALECAGFLTHLRYDVTVCVRSIVLRGFDRQCAEHIQLVM 13179 Query: 402 IAYGMKF----EAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEV-------SEE 450 G KF + R+ + D + AG G + + E Sbjct: 13180 KEQGTKFLEHEQVVSLQRVGEPDVAASDLAGDRGADTTSNTTADGGDKILVRFASGREEM 13359 Query: 451 YNTILMAIGREAVTDDVGLTTIGVER--AKSKKVLGRREQSTTIPWVYAIGDVLEGTPEL 508 ++T++ A+GR A T +G G+ A K V+ EQ T+ P VYAIGDV G PEL Sbjct: 13360 FDTVVYAVGRRACTQSLGCEAAGIAMHPASGKIVVDELEQ-TSAPGVYAIGDVCHGRPEL 13536 Query: 509 TPVAIQAGRVLMRRIFDGANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIY 568 TPVAI+AG +L RR+F GANE Y IPT VFTP+EYGCCGLSEEDA+ +YG+DNI ++ Sbjct: 13537 TPVAIKAGELLARRLFGGANEPMVYTNIPTVVFTPIEYGCCGLSEEDAITRYGQDNIEVF 13716 Query: 569 HNVFNPLEY----------TISERMDKDHCYL---KMICLRNEEEKVVGFHILTPN---- 611 FN + T + D D L K+IC + + K+VG+H + N Sbjct: 13717 LFGFNSVPVSACHWKKALSTRKDEFDLDVTPLNLSKIIC-KKPDNKIVGYHCIAMNVSGH 13893 Query: 612 -------------------------------------AGEVTQGFGIXXXXXXXXXDFDR 634 AGE TQG+ + D D Sbjct: 13894 TSRAQLGITPRVDWSGNWGRLARSDWLVWSGRKMHV*AGETTQGYALALKCGLTKDDLDA 14073 Query: 635 LIGIHPTVAENFTTLTLEKKEGDEELQASGCUG 667 ++GIHPT AE+F ++T+ ++ G+ + A GC G Sbjct: 14074 VVGIHPTDAESFHSMTITRRSGESFMAAGGCGG 14172 >gi|338240660|gb|AFNH01002836.1| Gregarina niphandrodes asmbl.3549, whole genome shotgun sequence Length = 8558 Score = 152 bits (384), Expect = 4e-37 Identities = 110/376 (29%), Positives = 181/376 (48%), Gaps = 39/376 (10%) Frame = +3 Query: 312 KLTADRFLISTGLRPKYPEIPGVKEYTITSDDLFQLPYSPGKTLCVGASYVSLECAGFLH 371 +L A+R +++ G R K +PG + SD F L P K VGA Y+++E AG L Sbjct: 7017 RLCAERVVVAVGSRSKKLGVPGEATVAVGSDGFFALERRPEKVAVVGAGYIAVEFAGVLT 7196 Query: 372 GFGFDVTVMVR-SILLRGFDQDMAERIRKHMIAYGMKFEAGVPTRIEQIDEKTDEKAGKY 430 G G + + +R +LR FD+ ++ + + + G G Q++E + GK Sbjct: 7197 GLGCETHLFLRHEKVLRSFDEMLSTKCTEFLERQGCHLHRGA-----QVEEFIVDANGKQ 7361 Query: 431 RVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTDDVGLTTIGVE--------------- 475 K+ T + +++I++AIGRE TD +GL + V Sbjct: 7362 IRL---KDGRT------FDHFDSIIVAIGREPNTDALGLDALNVRCDSAGHIQVDDFQNV 7514 Query: 476 ------RAK---SKKVLGRREQSTTIPWV----------YAIGDVLEGTPELTPVAIQAG 516 AK +K + + +T + V YA+GDV+ G ELTP+AI AG Sbjct: 7515 CFGQDNHAKDNHAKDDHAKDDHATNVSDVGPAVGADTGLYALGDVI-GRVELTPMAIAAG 7691 Query: 517 RVLMRRIFDGANELTE--YDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNP 574 R L R++ E + Y+ +PT VF+ G GLSE A ++G D++++Y N Sbjct: 7692 RRLADRLYLEGFEAAKVAYEDVPTVVFSHPPIGTVGLSEAQARERFGNDDVLVYTNTAVN 7871 Query: 575 LEYTISERM--DKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDF 632 L Y + + + +K Y+K++C+++ E+VVG H++ A E+ QGFG+ D Sbjct: 7872 LYYNVFDVIPTEKPKTYIKLVCVKHLHEQVVGIHVIGMGADEIIQGFGLALKLHATKNDL 8051 Query: 633 DRLIGIHPTVAENFTT 648 D ++ +HP+ AE T Sbjct: 8052 DNVVAVHPSAAEEIVT 8099 Score = 69.3 bits (168), Expect = 4e-12 Identities = 36/75 (48%), Positives = 46/75 (61%) Frame = +1 Query: 173 YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 232 YDL+VIG GSGG+A AK AS G +VA ++ + GGTCVNVGC+PKK+M Sbjct: 6433 YDLVVIGAGSGGVACAKRASSHGARVAVVE---------AGAFGGTCVNVGCVPKKIMWW 6585 Query: 233 ASLLGHSIHDAKKYG 247 AS + +A YG Sbjct: 6586 ASQAREFLQEAHHYG 6630 >gi|338242696|gb|AFNH01001817.1| Gregarina niphandrodes asmbl.2608, whole genome shotgun sequence Length = 26051 Score = 124 bits (311), Expect = 1e-28 Identities = 120/478 (25%), Positives = 199/478 (41%), Gaps = 6/478 (1%) Frame = -3 Query: 173 YDLIVIGGGSGGLAAAKEASRLGKKVACLDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQ 232 +DL V+G G GG AA +A++ G +VACL+ + GGTC+NVGCIP K M Sbjct: 6081 FDLAVVGAGPGGYVAAIKAAQAGLRVACLERRALA--------GGTCLNVGCIPTKTMLH 5926 Query: 233 ASLLGHSIHDAKKYGWKLPEGKVE--HQWNHLRDSVQDHIASLNWGYRVQLREKTVTYIN 290 + L K P VE H VQ + + ++ + K Sbjct: 5925 ITELAEQAGQQAKVLRDKPGSGVELAKLVKHREQVVQQLGKGIGFLFK---KNKVEALWG 5755 Query: 291 SYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVK---EYTITSDDLFQL 347 F P +++ N++ + A +++TG P E+PG+K ++ ++SD L Sbjct: 5754 ESARFVSPTKLAFGNRE-----VEAKHVIVATGSTPA--ELPGLKIDEKHILSSDGALSL 5596 Query: 348 PYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSILLRG-FDQDMAERIRKHMIAYGM 406 +P K L VG V LE A G V V+ + G D +A+ +RK + G+ Sbjct: 5595 TQAPKKLLVVGGGVVGLEFATVFRRLGSSVEVLEFLPQIGGALDTQVAQSLRKILEKQGV 5416 Query: 407 KFEAGVPTRIEQIDEKTDEKAGKYRVFWPKKNEETGEMQEVSEEYNTILMAIGREAVTDD 466 K GV + ++ G + K N T MQ ++ +L+ +GR A T + Sbjct: 5415 KIHTGVAVQGATVE-------GDHVTVTAKANGTT--MQFAGDK---VLVCVGRRANTQN 5272 Query: 467 VGLTTIGVERAKSKKVLGRREQSTTIPWVYAIGDVLEGTPELTPVAIQAGRVLMRRIFDG 526 +GL +GVE+ ++ ++L +T + + AIGD + G P L A + G + I Sbjct: 5271 LGLEELGVEKDRAGRILVDEHYNTNVAPILAIGDCIPG-PMLAHKAEEDGVAAVENILGH 5095 Query: 527 ANELTEYDQIPTTVFTPLEYGCCGLSEEDAMMKYGKDNIIIYHNVFNPLEYTISERMDKD 586 Y +P V+T E G +E++ K + Y P+ + D Sbjct: 5094 PASNHFYKYVPAVVYTSPECATVGATEDEL-----KQARVAYKAASFPMAANSRSKCDGH 4930 Query: 587 HCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIXXXXXXXXXDFDRLIGIHPTVAE 644 + + +++G I+ AGE+ + I HPT++E Sbjct: 4929 TDGFVKVLVDPATTRILGASIIAECAGEMITELTLAVKYGITATQLAATIHPHPTISE 4756 Database: G.niphandrodes/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.317 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,715,888 Number of Sequences: 3680 Number of extensions: 179702 Number of successful extensions: 885 Number of sequences better than 1.0e-04: 3 Number of HSP's better than 0.0 without gapping: 258 Number of HSP's successfully gapped in prelim test: 48 Number of HSP's that attempted gapping in prelim test: 587 Number of HSP's gapped (non-prelim): 404 length of query: 667 length of database: 5,120,956 effective HSP length: 101 effective length of query: 566 effective length of database: 4,749,276 effective search space: 2688090216 effective search space used: 2688090216 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 104 (44.7 bits)