TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|323451867|gb|EGB07743.1| selenoprotein [Aureococcus anophagefferens] (498 letters) Database: T.congolense/genome.fa 11 sequences; 22,287,946 total letters Searching...........done Score E Sequences producing significant alignments: (bits) Value TcIL3000_10_v2.embl 216 3e-56 T.congo.pschr.11 127 1e-29 T.congo.pschr.8 69 4e-12 T.congo.pschr4 69 6e-12 >TcIL3000_10_v2.embl Length = 3612457 Score = 216 bits (549), Expect = 3e-56 Identities = 151/454 (33%), Positives = 221/454 (48%), Gaps = 10/454 (2%) Frame = -1 Query: 38 KVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASIIGETLXXXXXXXXXXXXXXXX 97 +VAV+D LGGTCVNVGC+PKKLM T + + L Sbjct: 2272948 RVAVVDVQTVHGPPFFAALGGTCVNVGCVPKKLMVTGAQYMDQLRESAGFGWEFDASTIK 2272769 Query: 98 HDWESMKSTVQDHIKSLNFKYRVALREA-GITYLNRLGEFEDKNTISLTDKKGNKTSVT- 155 +W+++ + + +N Y ++ G+ + G E KN +++ + K+ V Sbjct: 2272768 ANWKTLIAAKNAAVLDINKSYEDMFKDTEGLEFFLGWGALEQKNVVTVREGADPKSKVKE 2272589 Query: 156 ---AARFIVAVGGRPNKLGCPGGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAG 212 A I+A G P L PG EH I S++ F L + P RVL VGGG+I++E G Sbjct: 2272588 RLQAEHIIIATGSWPQMLKIPGIEHCISSNEAFYLEEPPRRVLTVGGGFISVEFAGIFNA 2272409 Query: 213 M----GYPTTCMVRSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLTV 268 G T C + +LRGFD ++ + +G+ + P+KIE + G V Sbjct: 2272408 YKPVGGKVTLCYRNNPILRGFDYTLREELTKQLVANGIDIMTNENPSKIELNP-DGSKHV 2272232 Query: 269 TDSGGGVHEYDTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVDE-QLPGAPHVY 327 T G + D V++A GR T L + V VN K VDE P++Y Sbjct: 2272231 TFESGKTLDVDVVMMAIGRLPRTGDLQLQTV-----GVNLTDKGAIQVDEFSRTNVPNIY 2272067 Query: 328 AIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEYGTIGLSEDDA 387 AIGDV GR LTPVAI G + +FG K D+ VA+ +F+ GT GL+E++A Sbjct: 2272066 AIGDVT-GRIMLTPVAINEGASVVDTIFGSKPRKTDHTRVASAVFSIPPIGTCGLTEEEA 2271890 Query: 388 KAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVVGFHYLGPNAGEI 447 + V Y+S F PL + +S ++ ++ AK++ D G VVG H LG ++ EI Sbjct: 2271889 AKSFEKVAV--YLSCFTPLMHNISGSKYKK---FVAKIITDHGDGTVVGVHLLGDSSPEI 2271725 Query: 448 TQGFSIAMRKGATYADFISTVGIHPTVAEEFTSM 481 Q I M+ A +DF +T+G+HPT AEE SM Sbjct: 2271724 IQAVGICMKLNAKISDFYNTIGVHPTSAEELCSM 2271623 >T.congo.pschr.11 Length = 4797796 Score = 127 bits (319), Expect = 1e-29 Identities = 120/459 (26%), Positives = 194/459 (42%), Gaps = 13/459 (2%) Frame = -2 Query: 31 ECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLMHTASIIGETLXXXXXXXXX 90 + A+LG K A ++ LGGTC+NVGCIP K + A+ + Sbjct: 4689147 KAAQLGLKTACVE--------KRGALGGTCLNVGCIPSKALLHATHLYHDAHANFERYGL 4688992 Query: 91 XXXXXXXHDWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGN 150 D M+ + +K L L++ +TY F NT+++ G Sbjct: 4688991 VGGKNVTMDVSKMQQQKESAVKGLTGGVEYLLKKNKVTYYKGEAGFLTPNTLNVKGLDGK 4688812 Query: 151 KTSVTAARFIVAVGGRPNKLG-CPGGEHAI-DSDDLFSLPKAPGRVLCVGGGYIALECGG 208 + I+A G P L P E + S +L + P +++ +GGG I LE G Sbjct: 4688811 DEKLEVKNTIIATGSEPTALPFLPFDEKVVLSSTGALALQRVPKKMVVIGGGVIGLELGS 4688632 Query: 209 FTAGMGYPTTCMVRSILLRGFDRECVGKIEAHIKHHGV------QLQVGVTPAKIEKDAA 262 A +G T + F C ++A + V + +T K+ Sbjct: 4688631 VWARLGAEVTVVE-------FAPRCAPTLDADVTDVLVGALKKNEKMKFMTNTKVVAGVN 4688473 Query: 263 TG--VLTVTDSGGGVHEY---DTVLVATGRYADTAALGIDNVPGASANVNAKTKKLECVD 317 G V + GG E D +LV+ GR TA LG+D + + N K + Sbjct: 4688472 KGDSVDLEVEQAGGKRETLHCDALLVSVGRRPYTAGLGLDKI-NVATNERGFVKIGSHFE 4688296 Query: 318 EQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATTIFTPLEY 377 + G VYAIGDVV+ P L A + G+ A + G+ ++Y+ + I+T E Sbjct: 4688295 TNVAG---VYAIGDVVDKGPMLAHKAEDEGVACAE-ILAGRPGHVNYDVIPGVIYTMPEV 4688128 Query: 378 GTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKSTGKVVGF 437 ++G +ED+ K + V + +F P A S ++ + F K++ DK+T +++G Sbjct: 4688127 ASVGKTEDELK----KAGVAYKVGKF-PFN-ANSRAKAVAIEDGFVKVLTDKATDRILGV 4687966 Query: 438 HYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAE 476 H + AGE+ +AM GA+ D T HPT++E Sbjct: 4687965 HIVCSAAGELIAEACLAMEYGASSEDVGRTCHAHPTMSE 4687849 >T.congo.pschr.8 Length = 2451971 Score = 69.3 bits (168), Expect = 4e-12 Identities = 87/409 (21%), Positives = 165/409 (40%), Gaps = 29/409 (7%) Frame = +1 Query: 99 DWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGNK-TSVTAA 157 D E M+ T+Q+ ++ + AL + + L F + + + ++ + +VTA Sbjct: 2088163 DEERMRQTLQEVSETRETQILSALHASNVALLYGRAAFASPHELEVCSREAKEYRTVTAD 2088342 Query: 158 RFIVAVGGRP-NKLGCP-GGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGY 215 FI+A G P + P +H + SDDL LP P ++ VGGG + E A +G Sbjct: 2088343 YFIIATGSVPVTQPHIPVDHKHVVTSDDLMMLP-LPKSMVVVGGGALGSEFAATYARLGK 2088519 Query: 216 PTTCMV--RSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLTVTDSGG 273 ++ + ++ D + I+ ++ +GV + I + + G Sbjct: 2088520 TKVYLLDKKERIMPKEDDDVAETIQRGMEKNGVVVHQDCLLYSIHSPLQNNDWVMEGNNG 2088699 Query: 274 GVH-------------------EYDTVLVATGRYADTAALGIDN----VPGASANVNAKT 310 G H E + L+ TGR + LG+ N V G S +NA Sbjct: 2088700 GDHHPTVRYIIMHRKTHELQTYEVERALIVTGRRPNYFGLGLRNTKCEVRGGSLVLNAFG 2088879 Query: 311 KKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATT 370 +CV+++ H+YA+GD + ++ + L + TEP+ + + Sbjct: 2088880 ---QCVNQK-----HIYAVGDATDNDRSVSMGEAKGRLAVDHIYSPHVTEPLHPDH-SRI 2089032 Query: 371 IFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKS 430 +F +G +E + Q V Y E A S T F K++ Sbjct: 2089033 VFLDTAVAAVGKNEKQCREQNISYVVAKYGFELCSRNVAASNTEG------FVKILASND 2089194 Query: 431 TGK-VVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEF 478 + K ++G H +G +A I + + A+++ + + + +P+V++ F Sbjct: 2089195 SKKTLLGVHVVGWSASTIVEFATAAIQRKQSAYELSEMLTAYPSVSQAF 2089341 >T.congo.pschr4 Length = 1343510 Score = 68.9 bits (167), Expect = 6e-12 Identities = 87/409 (21%), Positives = 165/409 (40%), Gaps = 29/409 (7%) Frame = -3 Query: 99 DWESMKSTVQDHIKSLNFKYRVALREAGITYLNRLGEFEDKNTISLTDKKGNK-TSVTAA 157 D E M+ T+Q+ ++ + AL + + L F + + + ++ + +VTA Sbjct: 1342887 DEERMRQTLQEVSETRETQILSALHASNVALLYGRAAFASSHELEVCSREAKEYRTVTAD 1342708 Query: 158 RFIVAVGGRP-NKLGCP-GGEHAIDSDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGY 215 FI+A G P + P +H + SDDL LP P ++ VGGG + E A +G Sbjct: 1342707 YFIIATGSVPVTQPHIPVDHKHVVTSDDLMMLP-LPKSMVVVGGGALGSEFAATYARLGK 1342531 Query: 216 PTTCMV--RSILLRGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLTVTDSGG 273 ++ + ++ D + I+ ++ +GV + + + + G Sbjct: 1342530 TKVYLLDKKERIMPKEDDDVAETIQRGMEKNGVVVHQDCLLYSMHSPLQNNDWAMEGNNG 1342351 Query: 274 GVH-------------------EYDTVLVATGRYADTAALGIDN----VPGASANVNAKT 310 G H E + LV TGR + LG+ N V G S +NA Sbjct: 1342350 GDHHPTVRYTIMHRKTHELQTYEVERALVVTGRRPNYFGLGLRNTKCEVRGGSLVLNAFG 1342171 Query: 311 KKLECVDEQLPGAPHVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPMDYECVATT 370 +CV+++ H+YA+GD + ++ + L + TEP+ + + Sbjct: 1342170 ---QCVNQK-----HIYAVGDATDNDRSVSMGEAKGRLAVDHIYSPHVTEPLHPDH-SRI 1342018 Query: 371 IFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLEYALSETRSERGDGCFAKLVVDKS 430 +F +G +E + Q V Y E A S T F K++ Sbjct: 1342017 VFLDTAVAAVGKNEKQCREQNISYVVAKYGFELCSRNVAASNTEG------FVKILASND 1341856 Query: 431 TGK-VVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEF 478 + K ++G H +G +A I + + A+++ + + + +P+V++ F Sbjct: 1341855 SKKTLLGVHVVGWSASTIVEFATAAIQRKQSAYELSEMLTAYPSVSQAF 1341709 Database: T.congolense/genome.fa Posted date: Nov 21, 2011 7:47 PM Number of letters in database: 22,287,946 Number of sequences in database: 11 Lambda K H 0.317 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,489,921 Number of Sequences: 11 Number of extensions: 192932 Number of successful extensions: 777 Number of sequences better than 1.0e-04: 4 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 709 Number of HSP's gapped (non-prelim): 298 length of query: 498 length of database: 7,429,315 effective HSP length: 102 effective length of query: 396 effective length of database: 7,428,193 effective search space: 2941564428 effective search space used: 2941564428 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 105 (45.1 bits)