TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|323451867|gb|EGB07743.1| selenoprotein [Aureococcus
anophagefferens]
         (498 letters)

Database: S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.675 of Sphaeroforma arctica JP610                           86   2e-16
supercont1.1152 of Sphaeroforma arctica JP610                          59   2e-08

>supercont1.675 of Sphaeroforma arctica JP610
          Length = 50823

 Score = 86.3 bits (212), Expect = 2e-16
 Identities = 41/92 (44%), Positives = 51/92 (55%)
 Frame = +1

Query: 12   FDYDXXXXXXXXXXLACSKECAKLGAKVAVLDFVKPSPAGSTWGLGGTCVNVGCIPKKLM 71
            +D D          +A +KE AK GAKVA+ D+VKPS  G+ WGLGGTCVNVGC+PKK+M
Sbjct: 7498 YDVDFIVIGGGSGGMAAAKEAAKNGAKVALFDYVKPSTQGTQWGLGGTCVNVGCVPKKIM 7677

Query: 72   HTASIIGETLXXXXXXXXXXXXXXXXHDWESM 103
            H A +    +                HDW SM
Sbjct: 7678 HYAGLQAINMHDAQALGWQVEADSIKHDWTSM 7773



 Score = 83.6 bits (205), Expect = 1e-15
 Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +2

Query: 168   NKLGCPGGEHAID-SDDLFSLPKAPGRVLCVGGGYIALECGGFTAGMGYPTTCMVRSILL 226
             N +  P    AI  SDD+FSL  +PGR LCVG  YI+LECGGF   +GY     +RSI L
Sbjct: 10931 NFISTPPPTRAIPTSDDIFSLYTSPGRTLCVGASYISLECGGFLKELGYEVDVAMRSIPL 11110

Query: 227   RGFDRECVGKIEAHIKHHGVQLQVGVTPAKIEKDAATGVLTVTDSGGGVHEYDTVLV 283
             RGFDR+C  K+   +   GV       P+ I+K ++  V+    +  GV+ +  +LV
Sbjct: 11111 RGFDRQCSEKVADLMDKLGVTFHKQYVPSLIKKTSSGKVVVEWGA*SGVYLHACMLV 11281



 Score = 55.8 bits (133), Expect = 3e-07
 Identities = 25/49 (51%), Positives = 31/49 (63%)
 Frame = +1

Query: 359   TEPMDYECVATTIFTPLEYGTIGLSEDDAKAQLGECNVESYISEFAPLE 407
             T   DY+ VAT +FTP EYG +G SE+DA    GE  +E Y+ EF  LE
Sbjct: 13846 THQQDYKMVATAVFTPFEYGAVGYSEEDALTTFGEDAIEVYLFEFTTLE 13992



 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +1

Query: 325   HVYAIGDVVEGRPELTPVAIEAGLRLARRLFGGKTEPM 362
             H+YAIGD  + RPELTPVA++AG  LARR+FGG ++ M
Sbjct: 12676 HIYAIGDCAQERPELTPVAVQAGQYLARRVFGGSSKNM 12789



 Score = 53.1 bits (126), Expect = 2e-06
 Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = +1

Query: 450   GFSIAMRKGATYADFISTVGIHPTVAEEFTSMTVTKSSGES-AAKGGCUG 498
             G+++A++ G T A F  TVGIHPT AE F ++ +T+ SG+S  A+GGC G
Sbjct: 15523 GYALALKAGVTKAMFDDTVGIHPTDAESFHALEITRRSGKSWVAEGGCGG 15672



 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
 Frame = +3

Query: 412   ETRSERGDGCFAKLVVDKSTG-KVVGFHYLGPNAGEITQGFSIAM 455
             E  ++ GD C AKLV  K+   +VVGFH++GPNAGEITQG ++ +
Sbjct: 14718 EYDADFGDTCLAKLVCLKNENERVVGFHFIGPNAGEITQGTTLCL 14852


>supercont1.1152 of Sphaeroforma arctica JP610
          Length = 21143

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +3

Query: 433   KVVGFHYLGPNAGEITQGFSIAMRKGATYADFISTVGIHPTVAEEFTSM 481
             KVVG H +G  A E+TQGF +A++ GAT  DF ++V IHPT AEE  +M
Sbjct: 16722 KVVGMHIMGIGADEMTQGFGVAIKMGATKKDFDNSVAIHPTAAEELVTM 16868


  Database: S.arctica/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.317    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,694,085
Number of Sequences: 15618
Number of extensions: 974758
Number of successful extensions: 3234
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 2324
Number of HSP's gapped (non-prelim): 1386
length of query: 498
length of database: 40,529,447
effective HSP length: 113
effective length of query: 385
effective length of database: 38,764,613
effective search space: 14924376005
effective search space used: 14924376005
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)