TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74761781|sp|Q9NX07.1|TSAP1_HUMAN RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1
         (287 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig578  |  | 1 to 10579                                          71   9e-13
Cf_Contig1013  |  | 1 to 74767                                         52   6e-07

>Cf_Contig578  |  | 1 to 10579
          Length = 10579

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
 Frame = +3

Query: 3    ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
            AS+++GDL+  ++E  +   F + G T+++V++ R+ +T    GY +V F +   AEK +
Sbjct: 3405 ASIYVGDLDATINEPQLVELFKSFG-TILNVRVCRDIITQRSLGYGYVNFDNHDDAEKAI 3581

Query: 63   HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYS----LFVGDLTPDVDDGMLYEFFVK 118
              +N K +      K  +L +    +Q D +  YS    +FV +L  +VD   L++ F K
Sbjct: 3582 EAMNFKRVGD----KCMRLMW----QQRDPALRYSGNGNIFVKNLETEVDSKSLHDIFNK 3737

Query: 119  --VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 160
              +  SC   KV+ D+ G S+GYGFV F DE   K A+ +  GA
Sbjct: 3738 FGLILSC---KVMEDEEGKSRGYGFVHFKDETSAKDAIVKMNGA 3860



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 27/77 (35%), Positives = 46/77 (59%)
 Frame = +3

Query: 97   SLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 156
            +L+V +  P+  D  L E F K Y + +  +V++ ++G S+G+GFV F+D  E   AL E
Sbjct: 4254 NLYVRNFDPEFTDADLLELF-KEYGNVKSCRVMMSESGASRGFGFVSFSDADEANAALRE 4430

Query: 157  CQGAVGLGSKPVRLSVA 173
              G + L  KP+ +++A
Sbjct: 4431 MNGRM-LNGKPLIVNIA 4478


>Cf_Contig1013  |  | 1 to 74767
          Length = 74767

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 48/158 (30%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
 Frame = +3

Query: 4     SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
             S+W+G L+P ++E  +   F  +G  V SV++  +  T    GY +V F D + AEK L 
Sbjct: 65757 SIWVGGLDPELNEQKLYDYFVRIG-PVASVRVCVDSATQKSLGYGYVNFQDPSDAEKALD 65933

Query: 64    KINGKPLPGATPAKRFKLNYATYGKQPD--NSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
             +       GA    RF L  A   + P    S   ++ V  L   VD   L E F K Y 
Sbjct: 65934 Q------AGAKLGTRF-LRIAKIQRDPSKRRSGVNNILVKKLPKSVDTFALKEMFGK-YG 66089

Query: 122   SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 159
                   +  D+ G S+GY  + F  E     A+ E  G
Sbjct: 66090 RLTAIGLACDERGESRGYARISFEREESAVDAVKEMDG 66203



 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 26/80 (32%), Positives = 46/80 (57%)
 Frame = +3

Query: 92    NSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQK 151
             + P  S++VG L P++++  LY++FV++ P       V   T  S GYG+V F D  + +
Sbjct: 65742 SGPNPSIWVGGLDPELNEQKLYDYFVRIGPVASVRVCVDSATQKSLGYGYVNFQDPSDAE 65921

Query: 152   RALTECQGAVGLGSKPVRLS 171
             +AL   Q    LG++ +R++
Sbjct: 65922 KALD--QAGAKLGTRFLRIA 65975


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,688,794
Number of Sequences: 1089
Number of extensions: 116163
Number of successful extensions: 482
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 128
length of query: 287
length of database: 12,349,441
effective HSP length: 100
effective length of query: 187
effective length of database: 12,240,541
effective search space: 2288981167
effective search space used: 2288981167
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)
