TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338242802|gb|AFNH01001764.1| Gregarina niphandrodes asmbl.256...    29   3.3  
gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.328...    29   4.3  
gi|338242538|gb|AFNH01001896.1| Gregarina niphandrodes asmbl.268...    28   5.6  
gi|338239776|gb|AFNH01003278.1| Gregarina niphandrodes asmbl.634...    28   7.4  
gi|338240499|gb|AFNH01002916.1| Gregarina niphandrodes asmbl.362...    28   7.4  
gi|338240642|gb|AFNH01002845.1| Gregarina niphandrodes asmbl.355...    28   7.4  
gi|338240773|gb|AFNH01002779.1| Gregarina niphandrodes asmbl.349...    28   9.6  
gi|338241618|gb|AFNH01002356.1| Gregarina niphandrodes asmbl.310...    28   9.6  
gi|338241668|gb|AFNH01002331.1| Gregarina niphandrodes asmbl.307...    28   9.6  

>gi|338242802|gb|AFNH01001764.1| Gregarina niphandrodes asmbl.2560,
            whole genome shotgun sequence
          Length = 15313

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 39   GKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVA--SALVARRHYRFIHGI 95
            G+CP NG +   L L+   + I+ S+    N G+   +   A  S +  RR + F+  I
Sbjct: 2826 GQCPRNGHENGGLLLW*PPIGIISSSGH*NNFGIANPQNFYADHSRIHGRRRFVFVRAI 2650


>gi|338241217|gb|AFNH01002558.1| Gregarina niphandrodes asmbl.3288,
             whole genome shotgun sequence
          Length = 45373

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 32    IRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNC 70
             + L L   KCP       +++  +H +  M+S NF+GNC
Sbjct: 40470 LNLYLHLAKCPHG----PSVKFQVHNIHTMESVNFIGNC 40366


>gi|338242538|gb|AFNH01001896.1| Gregarina niphandrodes asmbl.2680,
             whole genome shotgun sequence
          Length = 56005

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 170   IDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILC 219
             +D   C +S     F P+VIE ++EG      L AV   V++ G   I C
Sbjct: 12433 VDDTLCVQS-----FLPLVIEPIIEGPSFLQTLAAVSR*VRQTGTQHIYC 12567


>gi|338239776|gb|AFNH01003278.1| Gregarina niphandrodes asmbl.634,
           whole genome shotgun sequence
          Length = 4127

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +3

Query: 342 KEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVS 401
           K   SYLS  + ++ E Y +      +NPI    TLK+    R+  +    +M+   + S
Sbjct: 219 K*FMSYLSRDVLQIWERYRQLQCRLAYNPILTIRTLKSYSLRREARLD--ATMMPGGKES 392

Query: 402 GARVVPLGSMQTVS 415
           GA  +P  +  TVS
Sbjct: 393 GA-TLPSQAESTVS 431


>gi|338240499|gb|AFNH01002916.1| Gregarina niphandrodes asmbl.3621,
            whole genome shotgun sequence
          Length = 33808

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 432  AYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDN--YDKTEDVD 480
            AY ++ +    +  DV+ FIK   R LK  ++  S E DD+  +++ ED+D
Sbjct: 3547 AYASSVNDGDDEDDDVEEFIKDRKRVLKQTKRFLSDEDDDSQLFEEGEDLD 3699


>gi|338240642|gb|AFNH01002845.1| Gregarina niphandrodes asmbl.3557,
            whole genome shotgun sequence
          Length = 3879

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 35   LLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGV--GEREGRVASALVARRHYR 90
            L E   CP NGW  S L  F+   A   S + +G  G+  G R+ R  +    +R  R
Sbjct: 1899 LKEASSCPRNGW--SLLIPFIQPNATASSPDQIGGVGLTRGNRDSREGTGCEEKRGRR 2066


>gi|338240773|gb|AFNH01002779.1| Gregarina niphandrodes asmbl.3498,
            whole genome shotgun sequence
          Length = 14632

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
 Frame = +1

Query: 181  TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEEL-- 238
            TA F  V +E     D  +  L+   A +Q  G    +      S    R+PD L+    
Sbjct: 6772 TAAFSKVFLEQSCASDSDQDWLELSVASIQPSGRQLSVFTILQESDTRGRLPDALQVTKG 6951

Query: 239  -AVICANY--DIPHIVNNAYGVQSSKCMHL 265
             A   A +   +PH  NN      S C HL
Sbjct: 6952 SAAAAAIF*ATLPHCANNVIPKSCSTCWHL 7041


>gi|338241618|gb|AFNH01002356.1| Gregarina niphandrodes asmbl.3100,
            whole genome shotgun sequence
          Length = 6792

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 77   GRVASALVARRHYRFIHGIGRS 98
            GR+   L   RHY+ +HG+GR+
Sbjct: 1800 GRLCPHLPVPRHYQVVHGLGRA 1735


>gi|338241668|gb|AFNH01002331.1| Gregarina niphandrodes asmbl.3077,
            whole genome shotgun sequence
          Length = 9468

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = -1

Query: 430  PCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVR------KERSKESDDNYDK 475
            PC Y+  A+   +  +    F+  L RCL+ +R      +E   E DD+ D+
Sbjct: 5868 PCRYMQLATRKDLLFKHHFCFVSELSRCLQELRTRIHGIEETRGEHDDHEDQ 5713


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,674,616
Number of Sequences: 3680
Number of extensions: 129645
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 452
length of query: 501
length of database: 5,120,956
effective HSP length: 99
effective length of query: 402
effective length of database: 4,756,636
effective search space: 1912167672
effective search space used: 1912167672
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
