TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848074|gb|ADNL01002529.1| Astrammina rara contig03000, who...    24   5.4  
gi|330847386|gb|ADNL01003217.1| Astrammina rara contig02706, who...    23   9.3  
gi|330848350|gb|ADNL01002253.1| Astrammina rara contig02689, who...    23   9.3  
gi|330850524|gb|ADNL01000079.1| Astrammina rara contig00082, who...    23   9.3  

>gi|330848074|gb|ADNL01002529.1| Astrammina rara contig03000, whole
            genome shotgun sequence
          Length = 3224

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 145  GMSLTLCFLTLRHKRPKAKYIIWPR 169
            G  +T C+  LRH RP+   +++ R
Sbjct: 2618 GYHVTTCYDRLRHNRPEPFTVVFAR 2692


>gi|330847386|gb|ADNL01003217.1| Astrammina rara contig02706, whole
            genome shotgun sequence
          Length = 1965

 Score = 23.5 bits (49), Expect = 9.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 331  SNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPI 371
            S+ Y+ LL    +   Y+SN  ++L ++Y  ++  TP+N +
Sbjct: 1019 SDEYEVLLTS--DDIDYISNMERELQKSYGYKVDITPYNKL 903


>gi|330848350|gb|ADNL01002253.1| Astrammina rara contig02689, whole
            genome shotgun sequence
          Length = 4647

 Score = 23.5 bits (49), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 199  RTDLKAVEAKVQELGPDC 216
            R D++ VEA V   GP+C
Sbjct: 2834 REDIRYVEATVVSTGPEC 2887


>gi|330850524|gb|ADNL01000079.1| Astrammina rara contig00082, whole
            genome shotgun sequence
          Length = 9033

 Score = 23.5 bits (49), Expect = 9.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 216  CILCIHSTTSCFAPR 230
            C++CIH T   F P+
Sbjct: 2790 CVMCIHGTFGDFRPK 2834


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 793,178
Number of Sequences: 3231
Number of extensions: 10363
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of query: 501
length of database: 483,365
effective HSP length: 78
effective length of query: 423
effective length of database: 231,347
effective search space: 97859781
effective search space used: 97859781
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)
