TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6279  |  | 1 to 14002                                         35   0.076
Lt_contig4811  |  | 1 to 2158                                          33   0.22 
Lt_contig495  |  | 1 to 25921                                          32   0.64 
Lt_contig1541  |  | 1 to 10501                                         32   0.84 
Lt_contig5262  |  | 1 to 11693                                         30   1.9  
Lt_contig4824  |  | 1 to 14951                                         30   1.9  
Lt_contig1537  |  | 1 to 17657                                         30   2.5  
Lt_contig4506  |  | 1 to 17484                                         30   2.5  
Lt_contig6429  |  | 1 to 14642                                         30   3.2  
Lt_contig5603  |  | 1 to 6823                                          29   5.5  
Lt_contig6470  |  | 1 to 7534                                          28   7.1  
Lt_contig6060  |  | 1 to 13823                                         28   7.1  
Lt_contig331  |  | 1 to 7609                                           28   7.1  
Lt_contig1331  |  | 1 to 6330                                          28   9.3  
Lt_contig989  |  | 1 to 13477                                          28   9.3  

>Lt_contig6279  |  | 1 to 14002
          Length = 14002

 Score = 35.0 bits (79), Expect = 0.076
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = -2

Query: 23   LCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLRQE 82
            LCG P  GK++F +ALA  L++    ++ VV+  D+                   +   E
Sbjct: 9834 LCGAPGTGKTSFVKALARHLRR----SLVVVSMSDI-------------------ITVNE 9724

Query: 83   LLKYLEYFLMAVI-NGCQMSVPPNRTEAMWEDF 114
            L + L+ F M +   G  +SV PN++  ++EDF
Sbjct: 9723 LRQILQPFEMDIEGGGVPLSVLPNQSVYVFEDF 9625


>Lt_contig4811  |  | 1 to 2158
          Length = 2158

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -3

Query: 65   AGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCL 118
            AG  A  A  + ++ RQELL+YLE+F ++V+   Q     +   A W   + C+
Sbjct: 1397 AGRNAEEASRRVEMFRQELLRYLEHFFLSVM---QHLAGSSANAAEWSRDLRCI 1245


>Lt_contig495  |  | 1 to 25921
          Length = 25921

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 194   PQALPPETIHLMGRKLEKPNPEKNAW--EHNSLTIPSPAC 231
             P A PP   H M R+   P PEK  W    +S  + +PAC
Sbjct: 14277 PSACPPSRCHPMWRRQ*APLPEKTCWATPRSSPAMSAPAC 14396


>Lt_contig1541  |  | 1 to 10501
          Length = 10501

 Score = 31.6 bits (70), Expect = 0.84
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = -1

Query: 188  QRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTAL 247
            +R+ + PQALP  T   +G+K   P P   A  H+S+   +P+  +  S E   + + A 
Sbjct: 6511 ERHHRPPQALPLHTAVHLGKK---PRPSTRAQTHHSVG*KTPSETASHSPERASVAVRAA 6341

Query: 248  ENPVKYAED 256
              P++  ++
Sbjct: 6340 AQPLRIEQE 6314


>Lt_contig5262  |  | 1 to 11693
          Length = 11693

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 22    VLCGLPAAGKSTFARALAHRL 42
             VLCGLP AGKST + AL+  L
Sbjct: 10032 VLCGLPGAGKSTLSVALSRLL 9970


>Lt_contig4824  |  | 1 to 14951
          Length = 14951

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -3

Query: 22    VLCGLPAAGKSTFARALAHRL 42
             VLCGLP AGKST + AL+  L
Sbjct: 13290 VLCGLPGAGKSTLSVALSRLL 13228


>Lt_contig1537  |  | 1 to 17657
          Length = 17657

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 188   QRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLL 244
             +R GQ     PP+ +H  G+K +       A  H S  +P  +C ++     T LLL
Sbjct: 10355 KRGGQSADEPPPKGLHTTGKK-KTGKTNGRAHTHRSYMLPGTSCVTQLFTWTTLLLL 10522


>Lt_contig4506  |  | 1 to 17484
          Length = 17484

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 162  EVYQLARKYSLGFCQLFLDCPLETCLQRNGQRPQALPP 199
            E+YQ   +++  F +  L C   TCLQ  G+RP + PP
Sbjct: 1018 EIYQRTTQFA*TFEEKLLACASLTCLQ--GRRPSSTPP 1125


>Lt_contig6429  |  | 1 to 14642
          Length = 14642

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 58   VMPDAFLAGARARPAPSQWKLLRQELLK 85
            V+PDA  A  R   AP  WK+LR  LL+
Sbjct: 5811 VLPDAPCATTRRLAAPQSWKVLRCRLLR 5728


>Lt_contig5603  |  | 1 to 6823
          Length = 6823

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 193 RPQALPPETIHLMGRKLEKPNPEKNAWEHN 222
           RP+  PP    L+G +L K NPE+  W+H+
Sbjct: 853 RPETPPPRA-GLIGERLRK-NPERQGWQHH 936


>Lt_contig6470  |  | 1 to 7534
          Length = 7534

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -2

Query: 54   AYDDVMPDAFLAGARARPAPSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWED 113
            +Y+ V  D   A    R AP   +LLR + L  +     A +NG +  +   R  ++  D
Sbjct: 5790 SYNGVHVDLLFASVNMRTAPDTNELLRDDFLSLVSLPCRATVNGIRTILEIRRRLSLPLD 5611

Query: 114  FITCL 118
               C+
Sbjct: 5610 AYACV 5596


>Lt_contig6060  |  | 1 to 13823
          Length = 13823

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -3

Query: 293  GNQEAFS-EMTFKQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQCCRI 340
            G QE F     F QRW  +    +      N H  C S + GWL  CR+
Sbjct: 1158 GYQEVFDCNERFSQRWAISQRGTL------NNHCPCHSNRRGWL--CRV 1036


>Lt_contig331  |  | 1 to 7609
          Length = 7609

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
 Frame = -1

Query: 138  TKTAVSRPLFLVLDDNFYYQSMRYEVYQ----LARKYSL---------------GFCQLF 178
            T+ AV   +F+  +DN +Y+SMR   Y+    L R+Y L                F  LF
Sbjct: 6916 TENAVVPMVFV--EDNMHYRSMRERYYRMCRTLEREYFLPSPHSDPTAAAQLQQNFIVLF 6743

Query: 179  ---LDCPLETCLQRNGQR 193
                  PL  CL RN QR
Sbjct: 6742 ELRFATPLAVCLARNAQR 6689


>Lt_contig1331  |  | 1 to 6330
          Length = 6330

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 213  NPEKNAWEHNSLTIPSPAC 231
            NP+ +   H+SL+IPSP C
Sbjct: 3971 NPDSSLVRHHSLSIPSPCC 4027


>Lt_contig989  |  | 1 to 13477
          Length = 13477

 Score = 28.1 bits (61), Expect = 9.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 155  YYQSMRYEVYQLARKYSLGFCQLFLDCPL 183
            ++ S++YE Y +    + G C LF +CPL
Sbjct: 4803 FFFSIQYENYSVRLVLTRGQCALFFNCPL 4889


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,945,523
Number of Sequences: 7267
Number of extensions: 330981
Number of successful extensions: 2177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 1824
length of query: 348
length of database: 10,532,946
effective HSP length: 101
effective length of query: 247
effective length of database: 9,798,979
effective search space: 2420347813
effective search space used: 2420347813
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
