TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340500680|gb|GL984353.1| Ichthyophthirius multifiliis unplace...    30   4.0  

>gi|340500680|gb|GL984353.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251392, whole genome shotgun
             sequence
          Length = 126985

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 137   LTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDC 181
             +TKT ++     +LDD+ +Y+S+ Y++ ++   Y LG    +L C
Sbjct: 32773 ITKTTIA-----LLDDSGFYESVNYDMAKINAGYDLGCDFFYLAC 32892


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,713,958
Number of Sequences: 2017
Number of extensions: 204032
Number of successful extensions: 648
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 81
length of query: 348
length of database: 16,266,656
effective HSP length: 104
effective length of query: 244
effective length of database: 16,056,888
effective search space: 3917880672
effective search space used: 3917880672
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
