TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|82547872:1-117 selenoprotein 1 [Leishmania major]
         (117 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                              94   2e-20

>contig_36
          Length = 2713248

 Score = 93.6 bits (231), Expect = 2e-20
 Identities = 55/109 (50%), Positives = 60/109 (55%), Gaps = 9/109 (8%)
 Frame = -3

Query: 17      ATESSAAT------HHKQ---ADSQATTKENEYPFSTILLIMDLXENWRIALYFVLAVXX 67
               AT++ AAT      +H Q      Q   + NEYPFSTILLIMDL ENWR ALYFVLAV  
Sbjct: 2380369 ATQAHAATLP*TLQNHPQQRTTSRQTAKQRNEYPFSTILLIMDL*ENWRTALYFVLAVRR 2380190

Query: 68      XXXXXXXXXXXXXXXXXXXXXXXXXXCFYSSTAAAAHTAIETRERWSWT 116
                                         CFYSSTAAAAHTAIE+ ERWSWT
Sbjct: 2380189 SSHSPSSLAPAVLHQLPPLVLLLAALCFYSSTAAAAHTAIESHERWSWT 2380043



 Score = 67.8 bits (164), Expect = 1e-12
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = -2

Query: 1       MRVLRHTGTCSDIAVDATESSAATHHKQADSQ 32
               MRVLRHTGTCSDIAVDATESSAATHHKQADSQ
Sbjct: 2380382 MRVLRHTGTCSDIAVDATESSAATHHKQADSQ 2380287


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.320    0.124    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,973,083
Number of Sequences: 36
Number of extensions: 44617
Number of successful extensions: 501
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 55
length of query: 117
length of database: 10,814,999
effective HSP length: 86
effective length of query: 31
effective length of database: 10,811,903
effective search space: 335168993
effective search space used: 335168993
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 88 (38.5 bits)