Command line: [exonerate -m p2g --showtargetgff -q querys/Leishmania_mexicana.prot1.fa -t donovani36cut.fa -E]
Hostname: [luke]

C4 Alignment:
------------
         Query: Lmsel1.Leishmania_mexicana located on mex120l07.p1k:subseq(28600,1200) [translate(1)]
        Target: contig_36:subseq(2370043,20236) [revcomp]
         Model: protein2genome:local
     Raw score: 248
   Query range: 43 -> 120
  Target range: 10272 -> 10038

    44 : GlnArgAlaThrGlyArgGlnThrAlaLysLysLys<->ArgValSerValSerThrThr :    62
         ||||||.!!|||.!!|||||||||||||||:!!!:!   ..!  ! !! !!||||||! !
         GlnArgThrThrSerArgGlnThrAlaLysGlnArgAsnGluTyrProPheSerThrIle
 10272 : CAACGCACCACAAGCAGGCAGACAGCCAAACAAAGAAACGAGTATCCGTTTTCTACGATT : 10215

    63 : LeuLeuIleMetAspLeuUnkGluAsnTrpArgIleAlaLeuTyrPheValLeuAlaVal :    82
         ||||||||||||||||||   ||||||||||||! !||||||||||||||||||||||||
         LeuLeuIleMetAspLeu***GluAsnTrpArgThrAlaLeuTyrPheValLeuAlaVal
 10214 : TTGCTGATTATGGACCTGTGAGAGAACTGGCGCACCGCCCTCTACTTCGTGCTTGCCGTA : 10155

    83 : CysArgSerSerHisSerProSerSerLeuAlaThrThrValLeuArgGlnGlnProPro :   102
          ! |||||||||||||||||||||||||||||| !!.!!||||||!.!|||  !||||||
         ArgArgSerSerHisSerProSerSerLeuAlaProAlaValLeuHisGlnLeuProPro
 10154 : AGAAGATCTTCACACTCACCCTCATCGCTGGCGCCGGCTGTTCTTCACCAATTGCCTCCC : 10095

   103 : LeuAlaProLeuLeuAlaAlaLeuCysPheTyrLysUnkThrAlaAlaAlaAla :   120
         |||!.!! !||||||||||||||||||||||||!.....|||||||||||||||
         LeuValLeuLeuLeuAlaAlaLeuCysPheTyrSerSerThrAlaAlaAlaAla
 10094 : CTAGTACTTCTCCTCGCTGCGTTGTGTTTCTACAGCTCAACCGCTGCAGCAGCG : 10039

vulgar: Lmsel1.Leishmania_mexicana 43 120 . contig_36:subseq(2370043,20236) 10272 10038 - 248 M 12 36 G 0 3 M 65 195
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	gene	10039	10272	248	-	.	gene_id 1 ; sequence Lmsel1.Leishmania_mexicana ; gene_orientation .
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	cds	10039	10272	.	-	.	
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	exon	10039	10272	.	-	.	insertions 3 ; deletions 0
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	similarity	10039	10272	248	-	.	alignment_id 1 ; Query Lmsel1.Leishmania_mexicana ; Align 10273 44 36 ; Align 10234 56 195
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: Lmsel1.Leishmania_mexicana located on mex120l07.p1k:subseq(28600,1200) [translate(1)]
        Target: contig_36:subseq(2370043,20236) [revcomp]
         Model: protein2genome:local
     Raw score: 156
   Query range: 0 -> 82
  Target range: 10339 -> 1280

     1 : MetArgAlaLeuSerHisThrGlyThrCysSerAspIleAlaValGluValThrGluSer :    20
         ||||||!.!||| !!||||||||||||||||||||||||||||||!!:!.!|||||||||
         MetArgValLeuArgHisThrGlyThrCysSerAspIleAlaValAspAlaThrGluSer
 10339 : ATGCGTGTGCTGCGCCACACAGGCACATGCAGCGACATTGCCGTAGACGCTACAGAATCA : 10282

    21 : SerValAlaThrArgHisArgGlnAlaAspSerGlnLysLysThrSerIleArg<->Phe :    39
         |||!.!||||||!.!|||!:!|||||||||||||||! !|||! ! !!:!!  !   |||
         SerAlaAlaThrHisHisLysGlnAlaAspSerGlnThrLysLysArgValSerValPhe
 10281 : TCCGCAGCAACGCACCACAAGCAGGCAGACAGCCAAACAAAGAAACGAGTATCCGTTTTC : 10222

    40 : TyrTyrPheAlaGlnArgAlaThr  >>>> Target Intron 1 >>>>  GlyArgG :    50
         ||| !!||||||.!.  !!.! !!           8810 bp           |||||| 
         TyrAspPheAlaAspTyrGlyPro++                         ++GlyArgV
 10221 : TACGATTTTGCTGATTATGGACCTgt.........................agGGCCGGG :  1379

    51 : lnThrAlaLysLysLysArgValSerValSerThrThrLeuLeuIleMetAspLeuUnkG :    70
          !..!:!!:::  !..!|||:!!:!!|||!!!  !  !|||:!!  !:!!! !|||    
         alValSerArgProSerArgIleAlaValCysTrpArgLeuValAspLeuAlaLeuIleP
  1378 : TGGTGTCGCGCCCGTCGCGCATCGCCGTCTGCTGGCGCTTGGTGGATTTGGCTCTCATTT :  1319

    71 : luAsnTrpArgIleAlaLeuTyrPheValLeuAlaVal :    82
           ! !     !   ||||||||||||:!!:!!:!!:!!
         heIleProValAlaAlaLeuTyrPheIleMetSerLeu
  1318 : TCATTCCTGTGGCGGCTCTGTACTTCATCATGTCGCTG :  1281

vulgar: Lmsel1.Leishmania_mexicana 0 82 . contig_36:subseq(2370043,20236) 10339 1280 - 156 M 38 114 G 0 3 M 9 27 5 0 2 I 0 8806 3 0 2 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	gene	1281	10339	156	-	.	gene_id 2 ; sequence Lmsel1.Leishmania_mexicana ; gene_orientation +
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	cds	10196	10339	.	-	.	
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	exon	10196	10339	.	-	.	insertions 3 ; deletions 0
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	splice5	10194	10195	.	-	.	intron_id 1 ; splice_site "GT"
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	intron	1386	10195	.	-	.	intron_id 1
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	splice3	1386	1387	.	-	.	intron_id 0 ; splice_site "AG"
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	cds	1281	1385	.	-	.	
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	exon	1281	1385	.	-	.	insertions 0 ; deletions 0
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	similarity	1281	10339	156	-	.	alignment_id 2 ; Query Lmsel1.Leishmania_mexicana ; Align 10340 1 114 ; Align 10223 39 27 ; Align 1386 48 105
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis