Command line: [exonerate -m p2g --showtargetgff -q querys/Linfantum.prot1.fa -t donovani36cut.fa -E]
Hostname: [luke]

C4 Alignment:
------------
         Query: gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) Leishmania infantum JPCM5 chromosome 36, complete sequence:[translate(1)]
        Target: contig_36:subseq(2370043,20236) [revcomp]
         Model: protein2genome:local
     Raw score: 440
   Query range: 7 -> 123
  Target range: 20197 -> 9999

     8 : GlyThrCysSerAspIleAlaValAspAlaThrGluSerSerAlaAlaThrHisHisLys :    27
         ..!:!!|||!!!!    !!.!!.!..!.!!|||!!:.!!|||  !::!.!!!...!.:!!
         SerSerCysCysValCysGlyAlaSerThrThrAspGlySerArgSerAlaArgGluGlu
 20197 : TCGTCATGCTGTGTATGTGGGGCGAGCACAACAGATGGCAGTCGGAGCGCACGGGAGGAG : 20140

    28 : GlnAla  >>>> Target Intron 1 >>>>  AspSerGlnGlnGlnArgThrThrS :    38
         :!!! !           9847 bp           :!!  !! !||||||||||||||||
         GluGlu++                         ++AsnHisProGlnGlnArgThrThrS
 20139 : GAAGAGgt.........................agAATCATCCGCAGCAACGCACCACAA : 10260

    39 : erArgGlnThrAlaLysGlnArgAsnGluTyrProPheSerThrIleLeuLeuIleMetA :    58
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         erArgGlnThrAlaLysGlnArgAsnGluTyrProPheSerThrIleLeuLeuIleMetA
 10259 : GCAGGCAGACAGCCAAACAAAGAAACGAGTATCCGTTTTCTACGATTTTGCTGATTATGG : 10200

    59 : spLeuUnkGluAsnTrpArgThrAlaLeuTyrPheValLeuAlaValArgArgSerSerH :    78
         |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
         spLeu***GluAsnTrpArgThrAlaLeuTyrPheValLeuAlaValArgArgSerSerH
 10199 : ACCTGTGAGAGAACTGGCGCACCGCCCTCTACTTCGTGCTTGCCGTAAGAAGATCTTCAC : 10140

    79 : isSerProSerSerLeuAlaProAlaValLeu<->GlnLeuProProLeuValLeuLeuL :    97
         ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
         isSerProSerSerLeuAlaProAlaValLeuHisGlnLeuProProLeuValLeuLeuL
 10139 : ACTCACCCTCATCGCTGGCGCCGGCTGTTCTTCACCAATTGCCTCCCCTAGTACTTCTCC : 10080

    98 : euAlaAlaLeuCysPheTyrSerSerThrAlaAlaAlaAlaHisThrAlaIleGluSerH :   117
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euAlaAlaLeuCysPheTyrSerSerThrAlaAlaAlaAlaHisThrAlaIleGluSerH
 10079 : TCGCTGCGTTGTGTTTCTACAGCTCAACCGCTGCAGCAGCGCATACGGCCATCGAATCAC : 10020

   118 : isGluArgTrpSerTrpThr :   123
         ||||||||||||||||||||
         isGluArgTrpSerTrpThr
 10019 : ATGAAAGATGGAGTTGGACG : 10000

vulgar: gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) 7 123 . contig_36:subseq(2370043,20236) 20197 9999 - 440 M 22 66 5 0 2 I 0 9843 3 0 2 M 59 177 G 0 3 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	gene	10000	20197	440	-	.	gene_id 1 ; sequence gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) ; gene_orientation +
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	cds	20132	20197	.	-	.	
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	exon	20132	20197	.	-	.	insertions 0 ; deletions 0
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	splice5	20130	20131	.	-	.	intron_id 1 ; splice_site "GT"
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	intron	10285	20131	.	-	.	intron_id 1
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	splice3	10285	10286	.	-	.	intron_id 0 ; splice_site "AG"
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	cds	10000	10284	.	-	.	
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	exon	10000	10284	.	-	.	insertions 3 ; deletions 0
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	similarity	10000	20197	440	-	.	alignment_id 1 ; Query gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) ; Align 20198 8 66 ; Align 10285 30 177 ; Align 10105 89 105
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) Leishmania infantum JPCM5 chromosome 36, complete sequence:[translate(1)]
        Target: contig_36:subseq(2370043,20236) [revcomp]
         Model: protein2genome:local
     Raw score: 169
   Query range: 0 -> 38
  Target range: 10339 -> 10225

     1 : MetArgValLeuArgHisThrGlyThrCysSerAspIleAlaValAspAlaThrGluSer :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetArgValLeuArgHisThrGlyThrCysSerAspIleAlaValAspAlaThrGluSer
 10339 : ATGCGTGTGCTGCGCCACACAGGCACATGCAGCGACATTGCCGTAGACGCTACAGAATCA : 10282

    21 : SerAlaAlaThrHisHisLysGlnAlaAspSerGlnGlnGlnArgThrThrSer :    38
         ||||||||||||||||||||||||||||||||||||  !:!!!:!  !..!|||
         SerAlaAlaThrHisHisLysGlnAlaAspSerGlnThrLysLysArgValSer
 10281 : TCCGCAGCAACGCACCACAAGCAGGCAGACAGCCAAACAAAGAAACGAGTATCC : 10226

vulgar: gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) 0 38 . contig_36:subseq(2370043,20236) 10339 10225 - 169 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2012-01-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	gene	10226	10339	169	-	.	gene_id 2 ; sequence gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) ; gene_orientation .
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	cds	10226	10339	.	-	.	
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	exon	10226	10339	.	-	.	insertions 0 ; deletions 0
contig_36:subseq(2370043,20236)	exonerate:protein2genome:local	similarity	10226	10339	169	-	.	alignment_id 2 ; Query gi|146105420|ref|NC_009420.1|:subseq(2417000,1040) ; Align 10340 1 114
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis