BLASTP 2.2.26+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: GPW8HP9A013


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           16,839,230 sequences; 5,784,003,470 total letters
Query= Lt_contig96:subseq(1,9671)  |  | 1 to 9672:[translate(1)]

Length=112


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|ABB82550.1|  selenoprotein 1 [Leishmania major]                 68.2    2e-13

ALIGNMENTS
>gb|ABB82550.1| selenoprotein 1 [Leishmania major]
Length=117

 Score = 68.2 bits (165),  Expect = 2e-13, Method: Compositional matrix adjust.
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 2/114 (2%)

Query  1    MHVPSHPGTRSNVVVESPKSAVATVDKRAE--APTKEIEYAIFFRCXLMDLXENWRIALY  58
            M V  H GT S++ V++ +S+ AT  K+A+  A TKE EY       +MDL ENWRIALY
Sbjct  1    MRVLRHTGTCSDIAVDATESSAATHHKQADSQATTKENEYPFSTILLIMDLUENWRIALY  60

Query  59   FVLAXKKSSRLPPSQAPTVLCQLLNRAPFFSSLCFXWLIAGAATMAVGTQLKWS  112
            FVLA  +SS  P S APTVL QL    P  ++LCF    A AA  A+ T+ +WS
Sbjct  61   FVLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWS  114


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jan 6, 2012  10:12 AM
  Number of letters in database: 1,489,036,174
  Number of sequences in database:  16,839,230

Lambda     K      H
   0.343    0.145    0.494 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 16839230
Number of Hits to DB: 105769908
Number of extensions: 3018265
Number of successful extensions: 11748
Number of sequences better than 100: 2
Number of HSP's better than 100 without gapping: 0
Number of HSP's gapped: 11746
Number of HSP's successfully gapped: 2
Length of query: 112
Length of database: 5784003470
Length adjustment: 80
Effective length of query: 32
Effective length of database: 4436865070
Effective search space: 141979682240
Effective search space used: 141979682240
T: 11
A: 40
X1: 15 (7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (19.2 bits)
S2: 67 (30.4 bits)