BLASTP 2.2.26+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro
A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and
David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new
generation of protein database search programs", Nucleic
Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Stephen
F. Altschul, John C. Wootton, E. Michael Gertz, Richa
Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and
Yi-Kuo Yu (2005) "Protein database searches using
compositionally adjusted substitution matrices", FEBS J.
272:5101-5109.


RID: GNZ3KF5H016


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           16,839,230 sequences; 5,784,003,470 total letters
Query= contig_36:subseq(2370043,20236) [translate(1)] L.Major

Length=113


                                                                   Score     E
Sequences producing significant alignments:                       (Bits)  Value

gb|ABB82550.1|  selenoprotein 1 [Leishmania major]                  159    3e-49
gb|EGC99887.1|  putative sigma-54 modulation protein [Burkhold...  33.5    4.5  
ref|YP_001578715.1|  sigma 54 modulation protein/ribosomal pro...  33.1    5.6  

ALIGNMENTS
>gb|ABB82550.1| selenoprotein 1 [Leishmania major]
Length=117

 Score =  159 bits (401),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 102/116 (88%), Positives = 104/116 (90%), Gaps = 3/116 (3%)

Query  1    MRVLRHTGTCSDIAVDATESSAATHHKQADSQ---QRNEYPFSTILLIMDLXENWRTALY  57
            MRVLRHTGTCSDIAVDATESSAATHHKQADSQ   + NEYPFSTILLIMDL ENWR ALY
Sbjct  1    MRVLRHTGTCSDIAVDATESSAATHHKQADSQATTKENEYPFSTILLIMDLUENWRIALY  60

Query  58   FVLAVRRSSHSPSSLAPAVLHQLPPLVLLLAALCFYSSTAAAAHTAIESHERWSWT  113
            FVLAV RSSHSPSS AP VL QLPPLV LLAALCFYSSTAAAAHTAIE+ ERWSWT
Sbjct  61   FVLAVSRSSHSPSSPAPTVLRQLPPLVPLLAALCFYSSTAAAAHTAIETRERWSWT  116


>gb|EGC99887.1| putative sigma-54 modulation protein [Burkholderia sp. TJI49]
Length=119

 Score = 33.5 bits (75),  Expect = 4.5, Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 24/99 (24%)

Query  2    RVLRHTGTCSDIAVDATESSAATHHKQADSQQRNEYP-----------------FSTILL  44
            RVLRH    SD  +D T   +  +HK+ D QQR E                   ++ I L
Sbjct  26   RVLRH----SDQVIDGTVILSVDNHKEKDKQQRAEINLHLKGKDIFVESSNGNLYAAIDL  81

Query  45   IMDLXENWRTALYFVLAVRRSSHSPSSLAPAVLH-QLPP  82
            ++D  +  R  +  +  ++  +H P  L PAV   +LPP
Sbjct  82   LIDKLD--RQVVKHMERLQTHAHDPIKLQPAVEQIELPP  118


>ref|YP_001578715.1| sigma 54 modulation protein/ribosomal protein S30EA [Burkholderia 
multivorans ATCC 17616]
 ref|YP_001947161.1| putative sigma-54 modulation protein [Burkholderia multivorans 
ATCC 17616]
 ref|ZP_03573039.1| ribosomal subunit interface protein [Burkholderia multivorans 
CGD2M]
 ref|ZP_03579861.1| ribosomal subunit interface protein [Burkholderia multivorans 
CGD2]
 ref|ZP_03584182.1| ribosomal subunit interface protein [Burkholderia multivorans 
CGD1]
 gb|ABX14218.1| sigma 54 modulation protein/ribosomal protein S30EA [Burkholderia 
multivorans ATCC 17616]
 dbj|BAG44625.1| putative sigma54 modulation protein [Burkholderia multivorans 
ATCC 17616]
 gb|EEE01032.1| ribosomal subunit interface protein [Burkholderia multivorans 
CGD1]
 gb|EEE05939.1| ribosomal subunit interface protein [Burkholderia multivorans 
CGD2]
 gb|EEE12639.1| ribosomal subunit interface protein [Burkholderia multivorans 
CGD2M]
Length=119

 Score = 33.1 bits (74),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 24/99 (24%)

Query  2    RVLRHTGTCSDIAVDATESSAATHHKQADSQQR-----------------NEYPFSTILL  44
            RVLRH    SD  +D T   +  +HK+ D QQR                 N   ++ I L
Sbjct  26   RVLRH----SDQVIDGTVILSVDNHKEKDKQQRAEINLHLKGKDIFVESSNGNLYAAIDL  81

Query  45   IMDLXENWRTALYFVLAVRRSSHSPSSLAPAVLH-QLPP  82
            ++D  +  R  +  +  ++  +H P  L PAV   +LPP
Sbjct  82   LIDKLD--RQVVKHMERLQTHAHDPIKLQPAVDQIELPP  118


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Jan 6, 2012  10:12 AM
  Number of letters in database: 1,489,036,174
  Number of sequences in database:  16,839,230

Lambda     K      H
   0.326    0.129    0.404 
Gapped
Lambda     K      H
   0.267   0.0410    0.140 
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 16839230
Number of Hits to DB: 114572459
Number of extensions: 3497482
Number of successful extensions: 10888
Number of sequences better than 100: 2
Number of HSP's better than 100 without gapping: 0
Number of HSP's gapped: 10888
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 5784003470
Length adjustment: 81
Effective length of query: 32
Effective length of database: 4420025840
Effective search space: 141440826880
Effective search space used: 141440826880
T: 11
A: 40
X1: 15 (7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 67 (30.4 bits)