T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:1 sec.
SCORE=85
*
 BAD AVG GOOD
*
Selw1_chlamydom   :  85
SPP00000030_1.0   :  87
Selw1_parameciu   :  88
selw2a_danio_re   :  84
selw28_danio_re   :  85
selw2_chlamydom   :  79
SPP00000031_1.0   :  83
SPP00000118_1.0   :  83
selw2_parameciu   :  85
selw3_parameciu   :  87
selw_bos_taurus   :  79
selwb_ostreococ   :  83
selw_gallus_gal   :  89
selw_pan_troglo   :  87
selw_rattus_nor   :  86
selw_tetrahymen   :  87
selw_xenopus_tr   :  87
cons              :  85

Selw1_chlamydom   ----------------------MA--PVQVHVLYCGGXGYGSRYR
SPP00000030_1.0   ----------------------MA---LAVRVVYCGAXGYKSKYL
Selw1_parameciu   -----------------------------VHITYCGGXGYWSQYN
selw2a_danio_re   M----------------------G---VQIKVEYCGGXGYEPRYQ
selw28_danio_re   M----------------------V---VKVKIEYCGAXGYEPRFQ
selw2_chlamydom   ----------------------MAKTSIAAQVVMCGGXGYRGRYR
SPP00000031_1.0   MSGEPGQTSVAPPPEE--VEPGSG---VRIVVEYCEPXGFEATYL
SPP00000118_1.0   MSGEPAPVSVVPPPGE--VEAGSG---VHIVVEYCKPXGFEATYL
selw2_parameciu   ----------------------LT---FKVHITYCGGXGYKPQYN
selw3_parameciu   ----------------------------SIHIVYCSGXGYGQFYN
selw_bos_taurus   ----------------------MK----KLSIEYCTGXGYLPKAL
selwb_ostreococ   ----------------------MN---PLVHITYXGGXGYLRFAT
selw_gallus_gal   ----------------------MP---LRVTVLYCGAXGYKPKYE
selw_pan_troglo   ----------------------MA---LAVRVVYCGAXGYKSKYL
selw_rattus_nor   MRR-----------------AAMA---LAVRVVYCGAXGYKPKYL
selw_tetrahymen   TVPEDV--------KQIQTNKNLK---FQVLIEYCGSXGYQNMFD
selw_xenopus_tr   ----------------------MT---VKVHVVYCGGXGYRPKFI

cons                                             :     **:     


Selw1_chlamydom   SLENAIRMKFPNADIKFSFEATP--------QATGFFEVEVN---
SPP00000030_1.0   QLKKKLEDEFPGRL-DICGEGTP--------QATGFFEVMVA---
Selw1_parameciu   LAQQYIKSLYPQA--EVTSKSQD--------KITGEMEITVTRKD
selw2a_danio_re   ELKRVVTAEFTDA--DVSG--FV--------GRQGSFEIEIN---
selw28_danio_re   ELKREICGNCPDA--EVSG--FV--------GRRGCFEIQIN---
selw2_chlamydom   SLVEAYRRRFPLWVP-TSPTTQR--------CSLEAFEISVN---
SPP00000031_1.0   ELASAVKEQYPGI--EIES--RL--------GGTGAFEIEIN---
SPP00000118_1.0   ELASAVKEEYPGI--EIES--RL--------GGTGAFEIEIN---
selw2_parameciu   LAASYIKQLYPKV--QASGKPSE--------KVTGEMEITVTKND
selw3_parameciu   FFVECLSIIYPNAKV--TGEQTPNVKHQNNNQVSGYFEIEVTKG-
selw_bos_taurus   GLAEELLSKYKND--LPSLTLLP--------SSGGVFEVKVG---
selwb_ostreococ   AIERAIVAKFPRASV--AAEPTP--------TTSGALEVKVA---
selw_gallus_gal   RLRAELEKRFPGAL-EMRGQGTQ--------EVTGWFEVTVG---
selw_pan_troglo   QLKKKLEDEFPGRL-DICGEGTP--------QATGFFEVMVA---
selw_rattus_nor   QLKEKLEHEFPGCL-DICGEGTP--------QVTGFFEVTVA---
selw_tetrahymen   YAKKCIEQIYPSA--TVVGKQIA--------GYTGCFDIYVN---
selw_xenopus_tr   KLKTLLEDEFPNEL-EITGEGTP--------STTGWLEVEVN---

cons                                                  ::: :    


Selw1_chlamydom   --GELVHSKK-NGGG--HVDNQEKVERI------------FAKIG
SPP00000030_1.0   --GKLIHSKK-KGDG--YVDTESKFLKL------------VAAIK
Selw1_parameciu   SKSELIHSKL-RGD-------------------------------
selw2a_danio_re   --GQLIFSKL-ETSG--FPYEDDIMGVIQRAYDGQPVEKITKSQP
selw28_danio_re   --DFLVFSKL-ESGG--FPYSEDIIEAVVKAKDGKP-EKITRNRK
selw2_chlamydom   --GGLVHSKT-QEKGMQFPYAP----------------------E
SPP00000031_1.0   --GQLVFSKL-ENGG--FPYEKDLIEAIRRASNGETLEKITNSRP
SPP00000118_1.0   --GQLVFSKL-ENGG--FPYEKDLMEAIRRASNGEPVEKITNSRP
selw2_parameciu   GTSLLVHSKL-NGDG--PFNNQ-----------------------
selw3_parameciu   GNKSVVHSKK-NGD-------------------------------
selw_bos_taurus   --EQLIFSKK-EVGR--FPEFNEIDD-------------------
selwb_ostreococ   --GELVHSKLTRGDG--YVDDPVKIERI------------LSAVE
selw_gallus_gal   --SRLVHSKK-NGDG--FVDTD-----------------------
selw_pan_troglo   --GKLIHSKK-KGDG--YVDTESKFLKL------------VAAIK
selw_rattus_nor   --GKLVHSKK-RGDG--YVDTESKFRKL------------VTAIK
selw_tetrahymen   --G------------------------------------------
selw_xenopus_tr   --GKLVHSKK-NGDG--FVDSDSKMQKI------------VTAIE

cons                                                           


Selw1_chlamydom   EAL---AK
SPP00000030_1.0   AALA--QG
Selw1_parameciu   -------G
selw2a_danio_re   P---CVIL
selw28_danio_re   E---CIIL
selw2_chlamydom   SW--SGCT
SPP00000031_1.0   P---CVIL
SPP00000118_1.0   P---CVIL
selw2_parameciu   -------S
selw3_parameciu   -------G
selw_bos_taurus   ------QL
selwb_ostreococ   RALGENAR
selw_gallus_gal   -------A
selw_pan_troglo   AALA--QG
selw_rattus_nor   AALA-QCQ
selw_tetrahymen   -------K
selw_xenopus_tr   QAM---GK

cons