genewise output
Score 14.94 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

selw_bos_taurus    8 YCTGXG                                            
                     YCTG G                                            
                     YCTGVG                                            
PHYCAscaffold_225309 ttaggg                                            
                     agcgtg                                            
                     ttatgc                                            


//
>PHYCAscaffold_26:subseq(146437,30000).[25309:25326].sp
TATTGTACAGGTGTGGGC
//
PHYCAscaffold_26:subseq(146437,30000)	GeneWise	match	25309	25326	14.94	+	.	PHYCAscaffold_26:subseq(146437,30000)-genewise-prediction-1
PHYCAscaffold_26:subseq(146437,30000)	GeneWise	cds	25309	25326	0.00	+	0	PHYCAscaffold_26:subseq(146437,30000)-genewise-prediction-1
//

genewise output
Score 40.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

selw_bos_taurus    4 LSIEYCTGXGYLPKALGLAEELLSKYKND----LPSLTLLPSS--GGVF 
                     + IEYCTG  ++ +A  +A+ELL+ ++ D    L S+TL P+S  GGVF 
                     VEIEYCTGCRWMLRAAWMAQELLTTFQQDEDSRLRSVTLTPNSKQGGVF 
PHYCAscaffold_-10251 ggagttagtctaccggtagcgccaatccgggaccctgacacatacgggt 
                     tataagcggggttgccgtcaattcctaaaaaggtgctctccacaaggtt 
                     ggcgcccgtcgggcggggagggggccgacacttcggcgcgcccagatgc 


selw_bos_taurus   47 EVKVGE-----------QLIFSKKEVGRFPEFNEI               
                      V + E            +++S+K   RFPE  E+               
                     NVYLREVGPNADPDAEPEMLWSRKIARRFPESKEL               
PHYCAscaffold_-10104 agtccgggcaggcgggcgacttcaagcctcgtagc               
                     atatgatgcacacacacattgcgatcggtcacaat               
                     cgtgtagcctcctctggagggtcgcgtactgaggg               


//
>PHYCAscaffold_26:subseq(146437,30000).[10251:9998].sp
GTGGAGATCGAGTACTGCACCGGGTGTCGCTGGATGCTGCGCGCGGCGTGGATGGCACAG
GAGCTGCTGACGACCTTCCAGCAAGACGAAGACAGTCGTCTCCGGTCGGTCACGCTCACG
CCCAACTCCAAACAGGGAGGTGTGTTCAACGTGTATCTGCGTGAAGTGGGCCCCAATGCC
GACCCTGACGCTGAGCCGGAAATGCTGTGGTCTCGCAAGATCGCGCGTCGATTCCCTGAG
TCAAAGGAGCTG
//
PHYCAscaffold_26:subseq(146437,30000)	GeneWise	match	10251	10000	54.70	-	.	PHYCAscaffold_26:subseq(146437,30000)-genewise-prediction-1
PHYCAscaffold_26:subseq(146437,30000)	GeneWise	cds	10251	10000	0.00	-	0	PHYCAscaffold_26:subseq(146437,30000)-genewise-prediction-1
//