TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000012_1.0
         (235 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.8                                                       108   2e-24
T.congo.pschr.6                                                        29   2.3  
T.congo.pschr.3.                                                       28   3.1  

>T.congo.pschr.8
          Length = 2451971

 Score =  108 bits (270), Expect = 2e-24
 Identities = 65/166 (39%), Positives = 92/166 (55%), Gaps = 13/166 (7%)
 Frame = -2

Query: 68   AVFGMGXFWGAERKF--WVLKGVYSTQVGFAGGYTSNP--TYKEVCSEKTGHAEVVRVVY 123
            A F  G FWG E  F  +   G+ S +VGF GG T  P  +Y+ V   ++GHAEV+ + Y
Sbjct: 6496 ATFAAGCFWGTEHYFKKFFGAGLLSHRVGFMGG-TELPEVSYELVKGGQSGHAEVLHLTY 6320

Query: 124  QPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAA------LSSKE 177
             P+ +++ +LL+ F+  H+ T   RQGND G+QYRSAI+  + +Q   A      L+  +
Sbjct: 6319 SPDKVAYRDLLEYFFRIHNSTTLNRQGNDVGSQYRSAIFYHNDEQKREAEHYIEGLNGAD 6140

Query: 178  NYQKVLSEHGFGP---ITTDIREGQTFYYAEDYHQQYLSKNPNGYC 220
                 L  + FGP   + T +     FY AE+YHQ YL  NP GYC
Sbjct: 6139 GELHKLIVNAFGPEAKVVTTVESASRFYPAEEYHQNYLELNPAGYC 6002



 Score = 26.9 bits (58), Expect = 8.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 137     FWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSS 175
               F   H+PT G       G+   S+++P S    +AALSS
Sbjct: 2050356 FPSRHNPTVGAHAAPPLGSPLGSSVWPPSFGARDAALSS 2050240


>T.congo.pschr.6
          Length = 1233507

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
 Frame = -2

Query: 12     LLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAKHHVNGNRTVEPFPEGTQMAVFG 71
              L +H+  P P+ G      +S +  + G      + A+H     RT  P   G++     
Sbjct: 988868 LHIHAHCPAPQSGRRVEKCMSARVCIRGSWVAQSIGARHGFPLVRTNFPLEGGSRWEYTA 988689

Query: 72     MGXFWGAERKFWVLKGV-------YSTQVGFAGG 98
              M  F+     +W++  V       YS  V FA G
Sbjct: 988688 MAHFF-----YWLVVAVSEPT*KSYSNTVFFASG 988602


>T.congo.pschr.3.
          Length = 1451265

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = -2

Query: 4      ATRRACQLLL--LHSLFPVPRMGNSASNIVSPQE-ALPGRKEQTPVAAKHHVNGNRTV-- 58
              A R A  +LL  LH+ +  P        +  PQ        E  P A  HH+ G RTV  
Sbjct: 150257 AARAAVPILLPLLHAAYDQP--------VACPQSHGASNHTEGHPTAGSHHIKGRRTVSA 150102

Query: 59     EPFP 62
              EP P
Sbjct: 150101 EPVP 150090


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,194,402
Number of Sequences: 11
Number of extensions: 111861
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 97
length of query: 235
length of database: 7,429,315
effective HSP length: 95
effective length of query: 140
effective length of database: 7,428,270
effective search space: 1039957800
effective search space used: 1039957800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)