genewise output
Score 198.31 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000078_1.0   18 VRRMGDSASKVISAEEALPGRTEPIPVTAKHHVSGNRTVEPFPEGTQMA 
                     V  MG   S  ++ + A+ GR E + +  KH + G +T   F EG +   
                     VSSMGSKTS-MVAKDNAIKGRVEKMLIEGKHTIFGTQTDGTF-EGMEEF 
supercont1.154: 7925 gttagaaat aggagagaagcggaacaggacaatgacaggat ggaggt 
                     tcctggacc ttcaaactaggtaatttagaacttgcacagct agtaat 
                     acagccact ggtgccccgtctgagtcacgcatccagaccgc acgggc 


SPP00000078_1.0   67 VFGMGXFWGAERK                       FWVLKGVYSTQVG 
                       GMG FWGAE++                       +W   GV  T VG 
                     QAGMGCFWGAEQR                       YWEQPGVVHTAVG 
supercont1.154: 8066 cggagtttgggcaGTAAGTG  Intron 1   CAGttgccgggcaggg 
                     acgtggtggcaag<0-----[8105 : 9027]-0>agaacgttacctg 
                     gtcgcccgctagg                       cgaggtaacgagt 


SPP00000078_1.0   93 FAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKV        
                     ++GG+T NPTY+E C+ +TGH E VRVVY P+  +++ LLKV        
                     YSGGYTENPTYEETCTAQTGHTECVRVVYDPKKTNLQALLKV        
supercont1.154: 9067 ttggtagacatggatagcagcagtgcggtgcaaaaccgttag        
                     acggacaaccaaacgccacgacagtgttaacaacatacttat        
                     tttcctgctacagactagaaccgtgagacccgactagaagag        


SPP00000078_1.0  135                        FWENHDPTQGMRQGNDFGTQYRSAVY 
                                            FWE+HDPTQ  RQGND GTQYRSA+Y 
                                            FWESHDPTQQNRQGNDVGTQYRSALY 
supercont1.154: 9193 GTAAGTC  Intron 2   CAGttgtcgcaccaacgagggactatgct 
                     <0-----[9193 : 9651]-0>tgacaaccaaagagaatgcaagccta 
                                            cgaacccaggcagattaaggcagtct 


SPP00000078_1.0  161 PTSAVQMEAAL                          SKEEYQKVLSKH 
                       +  Q + A                           S++ YQ  L+K  
                     LETDEQYQIAK           R:K[aag]       SRDAYQAALTKE 
supercont1.154: 9730 tgaggctcagaAAGTATGTT  Intron 3   TAGGtaggtcggcaag 
                     tacaaaaatca  <2-----[9765 :10052]-2> cgacaacctcaa 
                     gagcggtattg                          aatttagcgaga 


SPP00000078_1.0  185 NFGPITTDIREGQ--VFYYAEDYHQQYLSKNPDGYCGLGGTGVSC     
                       G I+TD+REG   VFYYAEDYHQQYL KN  GYCGL GTGV C     
                     GKGHISTDLREGPAPVFYYAEDYHQQYLDKNKGGYCGLKGTGVQC     
supercont1.154:10090 gagcatagtaggcgcgtttgggtcccttgaaaggttgcagaggct     
                     gagatccatgagcccttaacaaaaaaataaaaggaggtagcgtag     
                     aattctttagaacaaatctagcttagtgcgcgtctctggtacaat     


//
>supercont1.154:subseq(8866,30000).[7925:10224].sp
GTATCCTCAATGGGCAGCAAAACCTCTATGGTGGCTAAGGACAACGCCATCAAGGGTCGC
GTTGAGAAAATGCTTATCGAAGGCAAGCACACAATTTTCGGCACACAGACAGACGGCACG
TTCGAAGGCATGGAGGAGTTCCAGGCTGGCATGGGCTGCTTCTGGGGCGCTGAACAGAGG
TACTGGGAACAGCCGGGTGTAGTACACACGGCAGTGGGTTATTCTGGTGGCTACACTGAG
AACCCTACATACGAAGAGACATGCACTGCACAGACAGGACACACCGAGTGTGTGCGAGTG
GTATACGACCCCAAGAAAACCAATCTACAGGCATTATTGAAAGTGTTCTGGGAATCACAC
GACCCCACACAGCAGAACAGACAGGGAAATGATGTAGGAACGCAGTACAGATCGGCTCTC
TATTTGGAAACGGACGAGCAGTATCAAATTGCTAAGAAGTCAAGAGATGCTTATCAAGCG
GCCCTGACAAAGGAAGGAAAAGGTCATATCTCTACTGATTTAAGGGAAGGACCCGCACCA
GTATTTTACTATGCAGAGGACTATCATCAACAGTATTTGGACAAGAACAAGGGTGGCTAT
TGCGGTCTGAAGGGTACAGGCGTACAATGT
//
supercont1.154:subseq(8866,30000)	GeneWise	match	7925	10224	199.31	+	.	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	cds	7925	8104	0.00	+	0	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	intron	8105	9027	0.00	+	.	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	cds	9028	9192	0.00	+	0	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	intron	9193	9651	0.00	+	.	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	cds	9652	9764	0.00	+	0	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	intron	9765	10052	0.00	+	.	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	cds	10053	10224	0.00	+	1	supercont1.154:subseq(8866,30000)-genewise-prediction-1
//

genewise output
Score 14.96 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000078_1.0  199 FYYAEDYHQQYLS                                     
                     +YY   Y Q Y+S                                     
                     IYYDSYYKQMYIS                                     
supercont1.154-28594 attgattacataa                                     
                     taaagaaaatatg                                     
                     actttctgggttt                                     


//
>supercont1.154:subseq(8866,30000).[28594:28554].sp
ATATACTATGATAGTTACTATAAGCAGATGTATATTAGT
//
supercont1.154:subseq(8866,30000)	GeneWise	match	28594	28556	14.96	-	.	supercont1.154:subseq(8866,30000)-genewise-prediction-1
supercont1.154:subseq(8866,30000)	GeneWise	cds	28594	28556	0.00	-	0	supercont1.154:subseq(8866,30000)-genewise-prediction-1
//