TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000012_1.0
         (235 letters)

Database: P.polycephalum/genome.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig145269  416 416                                                  48   4e-05
Contig4808  7720 24475                                                 48   4e-05
Contig1663  17897 32807                                                33   1.4  
Contig932  11407 11917                                                 31   5.5  
Contig3439  10051 22151                                                30   7.1  

>Contig145269  416 416
          Length = 416

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +1

Query: 92  QVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEEL 133
           +VG+ GG   NPTYK+VC+  TGHAEV+ V Y    +++ +L
Sbjct: 160 RVGYQGGDAKNPTYKQVCTGNTGHAEVLVVEYDDTKVNYADL 285


>Contig4808  7720 24475
          Length = 24475

 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = -1

Query: 92    QVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEEL 133
             +VG+ GG   NPTYK+VC+  TGHAEV+ V Y    +++ +L
Sbjct: 13672 RVGYQGGDAKNPTYKQVCTGNTGHAEVLVVEYDDTKVNYADL 13547



 Score = 40.0 bits (92), Expect = 0.009
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2

Query: 201  FYYAEDYHQQYLSKNPNGYC 220
            FY AEDYHQ+YL  NP GYC
Sbjct: 9558 FYTAEDYHQKYLEANPGGYC 9499


>Contig1663  17897 32807
          Length = 32807

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 76    WGAERKFWVLKGVYSTQVGFAGG 98
             WG ER FW  +G+Y    GF GG
Sbjct: 17024 WGMERSFWGWEGIYGGMGGFLGG 16956


>Contig932  11407 11917
          Length = 11917

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 60   PFPEGTQMAVFGMGXFWGAERKFWVLKGVYSTQVGFAGGY--TSNPTYKEVCSEKTGHAE 117
            PF EG +++ FG     G E  +W  +      + F   +  TS P+ KEV   K     
Sbjct: 5153 PF*EGCELSDFGELVGGGGEGGWWCWRWGVHRVIHFCRDFSATSFPSMKEVIWAKASAVL 4974

Query: 118  VVRVVYQPE 126
            + RV Y+P+
Sbjct: 4973 LSRVSYEPK 4947


>Contig3439  10051 22151
          Length = 22151

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 72  MGXFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRV 121
           +  FWG E+K W    + S+   F      N +Y + C  +T +  +V+V
Sbjct: 773 LSYFWGTEKKIWRKNALISS---FVKNENENVSYGKTCDVRTVYYALVKV 913


  Database: P.polycephalum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,590,380
Number of Sequences: 297657
Number of extensions: 1410831
Number of successful extensions: 7283
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7279
length of query: 235
length of database: 106,339,350
effective HSP length: 110
effective length of query: 125
effective length of database: 73,597,080
effective search space: 9199635000
effective search space used: 9199635000
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)