T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=96
*
 BAD AVG GOOD
*
PHYCAscaffold_1   :  96
SPP00000012_1.0   :  96
cons              :  96

PHYCAscaffold_1   ---------------------------------------------
SPP00000012_1.0   MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTP

cons                                                           


PHYCAscaffold_1   ---------------------VATFAAGCFWGVQLAFDRVPGVLE
SPP00000012_1.0   VAAKHHVNGNRTVEPFPEGTQMAVFGMGXFWGAERKFWVLKGVYS

cons                                   :*.*. * ***.:  *  : ** .


PHYCAscaffold_1   TSVGYTQGSVDSPTYRQVCTGRTNHAEAINIVFDDSQVSYDALLK
SPP00000012_1.0   TQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLK

cons              *.**:: * ...***::**: :*.***.:.:*:: .::*:: ***


PHYCAscaffold_1   KFWSIHDPTTLNRQKNDKGTQYRSGIYYHNDDQRKAALASKEEYQ
SPP00000012_1.0   VFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQ

cons               **. ****   ** **:******.**  . .* :***:***:**


PHYCAscaffold_1   KTLSK----PIVTEIMEAKQFWDAEDYHQKYLE------------
SPP00000012_1.0   KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGT

cons              *.**:    **.*:* *.: *: ******:**.            


PHYCAscaffold_1   ---------K
SPP00000012_1.0   GVSCPVGIKK

cons                       *