TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000012_1.0
         (235 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_15                                                      150   2e-36
PHYCAscaffold_12                                                       30   3.7  
PHYCAscaffold_1                                                        29   4.9  
PHYCAscaffold_25                                                       29   6.4  

>PHYCAscaffold_15
          Length = 1032281

 Score =  150 bits (378), Expect = 2e-36
 Identities = 88/225 (39%), Positives = 121/225 (53%), Gaps = 5/225 (2%)
 Frame = +3

Query: 1      MLSATRRACQLLLLHSLFPVPRM--GNSASNIVSPQEALPGR---KEQTPVAAKHHVNGN 55
              MLS T     L    +L+P  +M  G  A +       +P R     +    A + ++ N
Sbjct: 733332 MLSKTSNGTGLSSFSTLYPYKKMFFGCVAPHFRIVSRRIPSRFFHSSRVFAMADNQLDNN 733511

Query: 56     RTVEPFPEGTQMAVFGMGXFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGH 115
              +          +A F  G FWG +  F  + GV  T VG+  G   +PTY++VC+ +T H
Sbjct: 733512 KP-------QNVATFAAGCFWGVQLAFDRVPGVLETSVGYTQGSVDSPTYRQVCTGRTNH 733670

Query: 116    AEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSS 175
              AE + +V+    +S++ LLK FW  HDPT   RQ ND GTQYRS IY  +  Q +AAL+S
Sbjct: 733671 AEAINIVFDDSQVSYDALLKKFWSIHDPTTLNRQKNDKGTQYRSGIYYHNDDQRKAALAS 733850

Query: 176    KENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYC 220
              KE YQK LS+    PI T+I E + F+ AEDYHQ+YL K   G C
Sbjct: 733851 KEEYQKTLSK----PIVTEIMEAKQFWDAEDYHQKYLEK--GGQC 733967



 Score =  143 bits (361), Expect = 2e-34
 Identities = 73/163 (44%), Positives = 99/163 (60%)
 Frame = -3

Query: 67     MAVFGMGXFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPE 126
              +A F  G FW  +R F  + GV +T VG+A G T NPTY+ V + +T HAE +++ +   
Sbjct: 732930 IATFAAGCFWAVQRSFDNVPGVIATSVGYAQGKTENPTYRTVVTGRTNHAESIKITFDES 732751

Query: 127    HMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEH 186
               +++EELLKVFW  HDPT   RQ  D GTQYRS IY    +Q + AL SK+ +QK L + 
Sbjct: 732750 QVTYEELLKVFWSIHDPTSLNRQEGDVGTQYRSGIYYQDEEQHKIALKSKDEHQKTLDK- 732574

Query: 187    GFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSC 229
                 PI T+I   +TF+ AE+ HQ+YL K   G C   G+ V C
Sbjct: 732573 ---PIVTEIEAAKTFWDAEEAHQKYLEK--GGNCSDKGSDVQC 732460


>PHYCAscaffold_12
          Length = 1145657

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +1

Query: 126    EHMSFEELLKVF----WE---NHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKEN 178
              EH  F E L+++    W+   NH  T+  RQ   H  +YR  I     KQ++   S+  +
Sbjct: 850249 EHERFLEALEMYPSGPWKIIANHVGTRSTRQAMTHAQKYRQKIERRKQKQLKLNTSATVS 850428

Query: 179    YQKVLSEHGFGPITTD 194
                ++ +     P T D
Sbjct: 850429 IAQLDALFPCSPTTVD 850476


>PHYCAscaffold_1
          Length = 2170955

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 42      EQTPVAAKHHVNGNRTVEPFPEGTQMA 68
               + +P A   +VNG   +EP+PEG  MA
Sbjct: 1238174 DNSPDAQMLYVNGKALLEPYPEGIDMA 1238094


>PHYCAscaffold_25
          Length = 841216

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 126    EHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQ 180
              E M+     +V  ENH       + N HGT++    + ++A + + ++  ++NY+
Sbjct: 373354 ERMACTTGFRVENENHHHHHDQEEPNCHGTKFADDSFSSAAWRFDESVDKRKNYE 373518


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,760,821
Number of Sequences: 917
Number of extensions: 296128
Number of successful extensions: 1407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 606
length of query: 235
length of database: 21,341,249
effective HSP length: 102
effective length of query: 133
effective length of database: 21,247,715
effective search space: 2825946095
effective search space used: 2825946095
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)