genewise output
Score 162.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0   67 MAVFGMGXFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGH 
                     +A F  G FWG +  F  + GV  T VG+  G   +PTY++VC+ +T H 
                     VATFAAGCFWGVQLAFDRVPGVLETSVGYTQGSVDSPTYRQVCTGRTNH 
PHYCAscaffold_110192 ggatgggtttggctgtgcgcggcgatggtacgtggacatccgtagcaac 
                     tcctccggtggtatctagtcgttacctgacagctagccagatgcggcaa 
                     ccgcttgctgcggagtcttattcagggcccacctctcgccgtcctaacc 


SPP00000012_1.0  116 AEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPT 
                     AE + +V+    +S++ LLK FW  HDPT   RQ ND GTQYRS IY   
                     AEAINIVFDDSQVSYDALLKKFWSIHDPTTLNRQKNDKGTQYRSGIYYH 
PHYCAscaffold_110339 gggaaagtggtcgatggttaatttacgcaacaccaagagactctgattc 
                     cactatttaacatgaacttaatgctaaccctagaaaaagcaagcgtaaa 
                     agctccacctaagccctgggacgattccggcccggtcgcaactatctcc 


SPP00000012_1.0  165 SAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLS 
                     +  Q +AAL+SKE YQK LS+    PI T+I E + F+ AEDYHQ+YL  
                     NDDQRKAALASKEEYQKTLSK----PIVTEIMEAKQFWDAEDYHQKYLE 
PHYCAscaffold_110486 aggccaggcgtaggtcaacaa    cagagaaggacttggggtccatcg 
                     aaaagacctccaaaaaactga    cttcattacaatgacaaaaaaata 
                     ttcgtgccggcgggcggagcg    tccggcggtagcgcggcccaatga 


SPP00000012_1.0  214 K                                                 
                     K                                                 
                     K                                                 
PHYCAscaffold_110621 a                                                 
                     a                                                 
                     g                                                 


//
>PHYCAscaffold_15:subseq(723332,30000).[10192:10623].sp
GTCGCCACGTTCGCTGCTGGGTGCTTTTGGGGCGTGCAGTTAGCGTTTGACCGTGTTCCA
GGTGTTCTCGAAACGTCGGTGGGCTACACCCAAGGCTCCGTTGACAGTCCCACGTACCGC
CAGGTTTGCACCGGTCGAACAAACCACGCAGAGGCCATTAACATCGTATTCGACGATTCA
CAAGTGAGCTACGACGCTTTGTTGAAGAAATTCTGGTCAATTCATGACCCCACGACGCTC
AACCGCCAGAAGAATGACAAGGGCACACAATACCGTTCAGGTATCTATTACCACAATGAT
GACCAGCGTAAGGCCGCCCTGGCGTCCAAGGAGGAGTACCAGAAGACACTGAGCAAGCCT
ATCGTCACGGAGATCATGGAGGCTAAACAGTTCTGGGACGCGGAGGACTACCACCAAAAA
TATCTGGAAAAG
//
PHYCAscaffold_15:subseq(723332,30000)	GeneWise	match	10192	10623	165.27	+	.	PHYCAscaffold_15:subseq(723332,30000)-genewise-prediction-1
PHYCAscaffold_15:subseq(723332,30000)	GeneWise	cds	10192	10623	0.00	+	0	PHYCAscaffold_15:subseq(723332,30000)-genewise-prediction-1
//

genewise output
Score 153.44 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0   67 MAVFGMGXFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGH 
                     +A F  G FW  +R F  + GV +T VG+A G T NPTY+ V + +T H 
                     IATFAAGCFWAVQRSFDNVPGVIATSVGYAQGKTENPTYRTVVTGRTNH 
PHYCAscaffold_1-9598 agatgggtttggccttgagcggagatggtgcgaagacatcaggagcaac 
                     tcctccggtgctagctaatcgttccctgacagacaaccagcttcggcaa 
                     ctgctctccgtggacttttagtcgttgctgatacgcgacccacgctgcc 


SPP00000012_1.0  116 AEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPT 
                     AE +++ +    +++EELLKVFW  HDPT   RQ  D GTQYRS IY   
                     AESIKITFDESQVTYEELLKVFWSIHDPTSLNRQEGDVGTQYRSGIYYQ 
PHYCAscaffold_1-9451 ggtaaaatggacgatggccagtttacgcatcaccgggggactctgattc 
                     cactatctaagatcaaattattgctaaccctagaagatgcaagcgtaaa 
                     agtcgcgccgcaggcggggagtgccccggggccggcctctgcctacccg 


SPP00000012_1.0  165 SAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLS 
                       +Q + AL SK+ +QK L +    PI T+I   +TF+ AE+ HQ+YL  
                     DEEQHKIALKSKDEHQKTLDK----PIVTEIEAAKTFWDAEEAHQKYLE 
PHYCAscaffold_1-9304 gggccaagcataggccaacga    cagagagggaattgggggccatcg 
                     aaaaaatctacaaaaaactaa    cttcataccactgacaacaaaata 
                     cgggcgtggaggtgcaaggcg    ttgggcgagggcgctagtcagtga 


SPP00000012_1.0  214 KNPNGYCGLGGTGVSC                                  
                     K  N  C   G+ V C                                  
                     KGGN--CSDKGSDVQC                                  
PHYCAscaffold_1-9169 agga  ttgagtggct                                  
                     agga  gcaagcatag                                  
                     gtcc  tccgttttgt                                  


//
>PHYCAscaffold_15:subseq(723332,30000).[9598:9126].sp
ATCGCTACGTTCGCTGCCGGTTGCTTCTGGGCTGTGCAGCGATCCTTTGATAATGTTCCA
GGGGTTATCGCGACTTCTGTGGGCTATGCGCAAGGTAAAACCGAGAACCCGACATACCGC
ACCGTAGTCACGGGCCGTACGAACCACGCAGAGTCTATCAAGATCACGTTCGACGAGAGC
CAAGTGACGTACGAGGAGCTGCTGAAAGTGTTTTGGTCCATCCACGACCCGACGTCGCTG
AACCGCCAGGAGGGCGACGTTGGCACTCAGTACCGCTCTGGAATCTACTACCAGGACGAG
GAGCAGCACAAGATTGCGCTGAAATCGAAGGATGAGCACCAAAAAACGCTGGACAAGCCT
ATTGTGACGGAGATCGAGGCAGCGAAGACGTTCTGGGACGCTGAAGAGGCTCACCAAAAG
TATCTGGAAAAGGGTGGCAACTGTTCCGACAAGGGTTCTGATGTTCAGTGT
//
PHYCAscaffold_15:subseq(723332,30000)	GeneWise	match	9598	9128	157.43	-	.	PHYCAscaffold_15:subseq(723332,30000)-genewise-prediction-1
PHYCAscaffold_15:subseq(723332,30000)	GeneWise	cds	9598	9128	0.00	-	0	PHYCAscaffold_15:subseq(723332,30000)-genewise-prediction-1
//