TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000012_1.0
         (235 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330847779|gb|ADNL01002824.1| Astrammina rara contig00179, who...    25   1.8  
gi|330847967|gb|ADNL01002636.1| Astrammina rara contig03118, who...    25   1.8  
gi|330848902|gb|ADNL01001701.1| Astrammina rara contig02019, who...    23   6.7  
gi|330848015|gb|ADNL01002588.1| Astrammina rara contig03063, who...    22   8.8  
gi|330848257|gb|ADNL01002346.1| Astrammina rara contig02799, who...    22   8.8  
gi|330849473|gb|ADNL01001130.1| Astrammina rara contig01327, who...    22   8.8  
gi|330849793|gb|ADNL01000810.1| Astrammina rara contig00930, who...    22   8.8  

>gi|330847779|gb|ADNL01002824.1| Astrammina rara contig00179, whole
            genome shotgun sequence
          Length = 9026

 Score = 24.6 bits (52), Expect = 1.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 6    RRACQLLLLHSLFPVPRMGNSASN 29
            RR C  L +   F V  M NSASN
Sbjct: 5477 RRGCNHLTMEPAFIVSHMENSASN 5548


>gi|330847967|gb|ADNL01002636.1| Astrammina rara contig03118, whole
           genome shotgun sequence
          Length = 731

 Score = 24.6 bits (52), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 69  VFGMGXFWGAERKFWVLKGVYSTQVGFA 96
           +FG+G  WG+E   +VL+     + G A
Sbjct: 152 LFGIGNIWGSEMLLYVLRSFIMDRWGKA 69


>gi|330848902|gb|ADNL01001701.1| Astrammina rara contig02019, whole
           genome shotgun sequence
          Length = 196

 Score = 22.7 bits (47), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 4   ATRRACQLLLLHSLFPVP 21
           ATR AC+++ L+  F VP
Sbjct: 110 ATRSACKMISLYVKFSVP 57


>gi|330848015|gb|ADNL01002588.1| Astrammina rara contig03063, whole
           genome shotgun sequence
          Length = 548

 Score = 22.3 bits (46), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 141 HDPTQGMRQGNDHGTQYRSAIYPT 164
           HDP   M  G +  T    A+Y T
Sbjct: 455 HDPMYDMEVGPNFSTSQTQAVYST 526


>gi|330848257|gb|ADNL01002346.1| Astrammina rara contig02799, whole
           genome shotgun sequence
          Length = 1322

 Score = 22.3 bits (46), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 34  QEALPGRKEQTPVAAKHHVNGNRT 57
           +E +PG  EQ+P   +   N N T
Sbjct: 502 EEIVPGSTEQSPAPIEEAANKNLT 573


>gi|330849473|gb|ADNL01001130.1| Astrammina rara contig01327, whole
           genome shotgun sequence
          Length = 779

 Score = 22.3 bits (46), Expect = 8.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 148 RQGNDHGTQYRSAIYPTSAKQMEAALSSKEN 178
           +QG++  T+Y +  +  SAK   +  S K N
Sbjct: 699 QQGSNRETEYNTLSFDESAKGWTSLFSYKPN 607


>gi|330849793|gb|ADNL01000810.1| Astrammina rara contig00930, whole
           genome shotgun sequence
          Length = 390

 Score = 22.3 bits (46), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 100 TSNPTYKEVCSEKTG 114
           +S+PT +EVC E  G
Sbjct: 274 SSSPTSREVCGESQG 318


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,745
Number of Sequences: 3231
Number of extensions: 5326
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of query: 235
length of database: 483,365
effective HSP length: 71
effective length of query: 164
effective length of database: 253,964
effective search space: 41650096
effective search space used: 41650096
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)