TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000012_1.0
         (235 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181994|emb|FR824067.1| Albugo laibachii Nc14, genomic cont...   144   7e-35
gi|325184366|emb|FR824103.1| Albugo laibachii Nc14, genomic cont...    28   5.6  
gi|325185892|emb|FR824138.1| Albugo laibachii Nc14, genomic cont...    28   5.6  
gi|325188771|emb|FR824234.1| Albugo laibachii Nc14, genomic cont...    27   9.5  
gi|325189857|emb|FR824280.1| Albugo laibachii Nc14, genomic cont...    27   9.5  

>gi|325181994|emb|FR824067.1| Albugo laibachii Nc14, genomic contig
             CONTIG_22_NC14_v4_183579_236
          Length = 183579

 Score =  144 bits (362), Expect = 7e-35
 Identities = 76/162 (46%), Positives = 96/162 (59%)
 Frame = +1

Query: 66    QMAVFGMGXFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQP 125
             + A F  G FWG E  F    GV  T VG+  G   NPTY++VC+ +TGHAE VRV +  
Sbjct: 26446 ETATFAAGCFWGVELAFQRTDGVLQTTVGYTNGAVENPTYRQVCTGQTGHAEAVRVEFDI 26625

Query: 126   EHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSE 185
               + + +LLKVFW  HDPT   +Q ND GTQYRS IY  + +Q + AL SKE Y K L++
Sbjct: 26626 SAVQYPDLLKVFWNIHDPTTLNQQKNDMGTQYRSGIYYHTEEQRKQALLSKEEYGKTLTK 26805

Query: 186   HGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGV 227
                 PI T+I E  TF+ AE  HQ+YL K   G C   G G+
Sbjct: 26806 ----PIVTEIEEASTFWPAEAEHQRYLEK--GGQCADKGCGI 26913


>gi|325184366|emb|FR824103.1| Albugo laibachii Nc14, genomic contig
            CONTIG_58_NC14_v4_105777_247
          Length = 105777

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 100  TSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFW 138
            +S+PTY    S++   A      Y PE  +F   +  FW
Sbjct: 8162 SSSPTYTRCSSDRIPFARSFLYTYLPERFAFLAKINTFW 8278


>gi|325185892|emb|FR824138.1| Albugo laibachii Nc14, genomic contig
            CONTIG_93_NC14_v4_81674_231
          Length = 81674

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 119  VRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAAL 173
            VR +  P+   F  ++ + W  H       Q ++  TQ+ S I+P   +Q+  AL
Sbjct: 7750 VRHLPNPDSYLFLFVVDIHWMKHAVEVRQEQFHNVETQWASFIFPVQQRQLSKAL 7586


>gi|325188771|emb|FR824234.1| Albugo laibachii Nc14, genomic contig
             CONTIG_189_NC14_v4_50180_142
          Length = 50180

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 166   AKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAE---DYHQQYLSKNP 216
             A ++ ++  S  +Y K +    FG +  ++ +GQT +YA+   +  Q  L+K+P
Sbjct: 23252 APELLSSQRSATSYGKTVDWWSFGVLVYEMIQGQTPFYAKNRRELFQNILTKSP 23413


>gi|325189857|emb|FR824280.1| Albugo laibachii Nc14, genomic contig
             CONTIG_235_NC14_v4_41419_133
          Length = 41419

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -1

Query: 166   AKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAE---DYHQQYLSKNP 216
             A ++ ++  S  +Y K +    FG +  ++ +GQT +YA+   +  Q  L+K+P
Sbjct: 15484 APELLSSQRSATSYGKTVDWWSFGVLVYEMIQGQTPFYAKNRRELFQNILTKSP 15323


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,419,416
Number of Sequences: 3816
Number of extensions: 130264
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 458
length of query: 235
length of database: 10,913,379
effective HSP length: 97
effective length of query: 138
effective length of database: 10,543,227
effective search space: 1454965326
effective search space used: 1454965326
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)