T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
scaffold_26_sub   :  99
scaffold_60_sub   :  99
cons              :  99

scaffold_26_sub   AMGXFWGPQRDFDQTEGIANTVVGYSGSVSRDSTVNPTYRNIRDY
scaffold_60_sub   AMGXFWGPQRDFDQTEGIASTVVGYSGSVSRDSTVNPTYRNIRDY

cons              *******************.*************************


scaffold_26_sub   AESIRITYNADKLKYEDLLEMFFDMHHPSDSRY-GTQYRSAIFVY
scaffold_60_sub   AESIRITYNADKLKYEDMLEMFFDMHTPSDSRFGGTQYRSAIFVY

cons              *****************:******** *****: ***********


scaffold_26_sub   SEEQKQLAEAACKKRGSVGELVKIEDASDFYRGEEYHQKYVEKAT
scaffold_60_sub   TEEQKQLAEVACKKRGSVGELVKIEDASDFYRGEEYHQKYVEKAT

cons              :********.***********************************


scaffold_26_sub   SRR
scaffold_60_sub   SRR

cons              ***