T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=98
*
 BAD AVG GOOD
*
scaffold_42_sub   :  98
SPP69000050_1.0   :  98
cons              :  98

scaffold_42_sub   --------EGMKVAVFANGCFWGSEKGIWRLPGDGIHSTAVGYCA
SPP69000050_1.0   MATNGNGASGAELATFALGXFWHPEASFANVPG--VVKTRVGYTG

cons                      .* ::*.** * ** .* .: .:**  : .* *** .


scaffold_42_sub   GYTPNPTYEEACSGGRVTRSVRVVYDPTKISFVDILRWFWEAHDP
SPP69000050_1.0   GSRPNPTYESVCAGDGHTEAMRVWFDPAIISYEDLLKQFFREHDP

cons              *  ******..*:*.  *.::** :**: **: *:*: *:. ***


scaffold_42_sub   ---------------------------------------------
SPP69000050_1.0   TQKSKCQYKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTVDPA

cons                                                           


scaffold_42_sub   ---------------------------
SPP69000050_1.0   GDWWDAEEYHQKYIEKSMMRRGSAGWW

cons