T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=91
*
 BAD AVG GOOD
*
scaffold_40_sub   :  91
SPP69000050_1.0   :  91
cons              :  91

scaffold_40_sub   -------ADGNKSLVVALGCFWCAEQAFEQYVPGVVEAVSGYAGG
SPP69000050_1.0   MATNGNGASGAELATFALGXFWHPEASFA-NVPGVVKTRVGYTGG

cons                     *.* :  ..*** ** .* :*   *****::  **:**


scaffold_40_sub   TNDNPSYRD---HPGHYEVILIEYDPNLTTVALLIEYAYRNMDP-
SPP69000050_1.0   SRPNPTYESVCAGDGHTEAMRVWFDPAIISYEDLLKQFFREHDPT

cons              :. **:*..     ** *.: : :** : :   *::  :*: ** 


scaffold_40_sub   ---------------------------------------------
SPP69000050_1.0   QKSKCQYKSAVWYHSEAHGTALAAVMKELEGKYRVRLATTVDPAG

cons                                                           


scaffold_40_sub   --------------------------
SPP69000050_1.0   DWWDAEEYHQKYIEKSMMRRGSAGWW

cons