tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 18:30:25 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/T.congolense/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/T.congolense.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/T.congolense_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         11
Seqs w/at least 1 hit:  11
Bases read:             22287946 (x2 for both strands)
Bases in tRNAs:         12236
tRNAs predicted:        110
Av. tRNA length:        111
Script CPU time:        3.03 s
Scan CPU time:          14.11 s
Scan speed:             3159.2 Kbp/sec

First pass search(es) ended: Wed Dec 28 18:30:43 CET 2011

Cove Stats:
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Candidate tRNAs read:     110
Cove-confirmed tRNAs:     30
Bases scanned by covels:  13776
% seq scanned by covels:  0.0 %
Script CPU time:          0.25 s
Cove CPU time:            18.66 s
Scan speed:               738.3 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 18:31:03 CET 2011

Summary
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Overall scan speed: 1236501.9 bp/sec

tRNAs decoding Standard 20 AA:              29
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      1
                                            -------
Total tRNAs:                                30

tRNAs with introns:     	0

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Isotype / Anticodon Counts:

Ala   : 1	  AGC:         GGC:         CGC:         TGC: 1     
Gly   : 3	  ACC:         GCC: 1       CCC:         TCC: 2     
Pro   : 2	  AGG: 1       GGG:         CGG:         TGG: 1     
Thr   : 2	  AGT: 1       GGT:         CGT:         TGT: 1     
Val   : 2	  AAC:         GAC:         CAC: 1       TAC: 1     
Ser   : 0	  AGA:         GGA:         CGA:         TGA:         ACT:         GCT:       
Arg   : 4	  ACG: 1       GCG:         CCG:         TCG: 1       CCT: 1       TCT: 1     
Leu   : 2	  AAG: 1       GAG:         CAG: 1       TAG:         CAA:         TAA:       
Phe   : 1	  AAA:         GAA: 1                               
Asn   : 1	  ATT:         GTT: 1                               
Lys   : 3	                            CTT: 2       TTT: 1     
Asp   : 0	  ATC:         GTC:                                 
Glu   : 2	                            CTC: 1       TTC: 1     
His   : 1	  ATG:         GTG: 1                               
Gln   : 2	                            CTG: 1       TTG: 1     
Ile   : 2	  AAT: 2       GAT:                      TAT:       
Met   : 1	                            CAT: 1                  
Tyr   : 0	  ATA:         GTA:                                 
Supres: 0	                            CTA:         TTA:       
Cys   : 0	  ACA:         GCA:                                 
Trp   : 0	                            CCA:                    
SelCys: 0	                                         TCA: