tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 19:49:34 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/S.arctica/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/S.arctica.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/S.arctica_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         15618
Seqs w/at least 1 hit:  638
Bases read:             121588341 (x2 for both strands)
Bases in tRNAs:         88988
tRNAs predicted:        873
Av. tRNA length:        101
Script CPU time:        20.31 s
Scan CPU time:          106.36 s
Scan speed:             2286.4 Kbp/sec

First pass search(es) ended: Wed Dec 28 19:52:39 CET 2011

Cove Stats:
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Candidate tRNAs read:     873
Cove-confirmed tRNAs:     335
Bases scanned by covels:  101179
% seq scanned by covels:  0.0 %
Script CPU time:          1.14 s
Cove CPU time:            124.68 s
Scan speed:               811.5 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 19:54:48 CET 2011

Summary
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Overall scan speed: 963114.1 bp/sec

tRNAs decoding Standard 20 AA:              318
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      17
                                            -------
Total tRNAs:                                335

tRNAs with introns:     	48

| Leu-AAG: 3 | Lys-TTT: 6 | Asp-GTC: 6 | His-GTG: 7 | Gln-CTG: 8 | Ile-TAT: 3 | Met-CAT: 7 | Tyr-GTA: 8 |

Isotype / Anticodon Counts:

Ala   : 27	  AGC: 12      GGC:         CGC: 5       TGC: 10    
Gly   : 27	  ACC:         GCC: 16      CCC:         TCC: 11    
Pro   : 19	  AGG: 10      GGG:         CGG: 2       TGG: 7     
Thr   : 17	  AGT:         GGT: 11      CGT: 5       TGT: 1     
Val   : 23	  AAC: 7       GAC: 1       CAC: 5       TAC: 10    
Ser   : 18	  AGA: 6       GGA:         CGA: 3       TGA: 4       ACT:         GCT: 5     
Arg   : 25	  ACG: 12      GCG:         CCG:         TCG: 5       CCT: 2       TCT: 6     
Leu   : 12	  AAG: 3       GAG:         CAG:         TAG:         CAA: 5       TAA: 4     
Phe   : 11	  AAA:         GAA: 11                              
Asn   : 12	  ATT:         GTT: 12                              
Lys   : 23	                            CTT: 15      TTT: 8     
Asp   : 16	  ATC:         GTC: 16                              
Glu   : 17	                            CTC: 12      TTC: 5     
His   : 1	  ATG:         GTG: 1                               
Gln   : 14	                            CTG: 8       TTG: 6     
Ile   : 16	  AAT: 13      GAT:                      TAT: 3     
Met   : 20	                            CAT: 20                 
Tyr   : 8	  ATA:         GTA: 8                               
Supres: 0	                            CTA:         TTA:       
Cys   : 6	  ACA:         GCA: 6                               
Trp   : 6	                            CCA: 6                  
SelCys: 0	                                         TCA: