tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 19:38:28 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/L.tarentolae/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/L.tarentolae.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/L.tarentolae_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         7267
Seqs w/at least 1 hit:  162
Bases read:             31598840 (x2 for both strands)
Bases in tRNAs:         20936
tRNAs predicted:        214
Av. tRNA length:        97
Script CPU time:        6.75 s
Scan CPU time:          40.53 s
Scan speed:             1559.3 Kbp/sec

First pass search(es) ended: Wed Dec 28 19:39:42 CET 2011

Cove Stats:
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Candidate tRNAs read:     214
Cove-confirmed tRNAs:     78
Bases scanned by covels:  23920
% seq scanned by covels:  0.0 %
Script CPU time:          0.12 s
Cove CPU time:            27.23 s
Scan speed:               878.4 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 19:40:10 CET 2011

Summary
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Overall scan speed: 846813.3 bp/sec

tRNAs decoding Standard 20 AA:              78
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      0
                                            -------
Total tRNAs:                                78

tRNAs with introns:     	3

| Tyr-GTA: 3 |

Isotype / Anticodon Counts:

Ala   : 5	  AGC: 2       GGC:         CGC: 2       TGC: 1     
Gly   : 5	  ACC:         GCC: 3       CCC: 1       TCC: 1     
Pro   : 5	  AGG: 2       GGG:         CGG: 2       TGG: 1     
Thr   : 6	  AGT: 3       GGT:         CGT: 2       TGT: 1     
Val   : 5	  AAC: 2       GAC:         CAC: 2       TAC: 1     
Ser   : 5	  AGA: 1       GGA:         CGA: 1       TGA: 1       ACT:         GCT: 2     
Arg   : 8	  ACG: 4       GCG:         CCG: 1       TCG: 1       CCT: 1       TCT: 1     
Leu   : 7	  AAG: 3       GAG:         CAG: 2       TAG: 1       CAA: 1       TAA:       
Phe   : 2	  AAA:         GAA: 2                               
Asn   : 3	  ATT:         GTT: 3                               
Lys   : 3	                            CTT: 2       TTT: 1     
Asp   : 2	  ATC:         GTC: 2                               
Glu   : 4	                            CTC: 3       TTC: 1     
His   : 2	  ATG:         GTG: 2                               
Gln   : 4	                            CTG: 3       TTG: 1     
Ile   : 3	  AAT: 2       GAT:                      TAT: 1     
Met   : 4	                            CAT: 4                  
Tyr   : 3	  ATA:         GTA: 3                               
Supres: 0	                            CTA:         TTA:       
Cys   : 1	  ACA:         GCA: 1                               
Trp   : 1	                            CCA: 1                  
SelCys: 0	                                         TCA: