tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 19:36:58 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/L.donovani_BPK282A1/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/L.donovani_BPK282A1.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/L.donovani_BPK282A1_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         36
Seqs w/at least 1 hit:  36
Bases read:             32444998 (x2 for both strands)
Bases in tRNAs:         40422
tRNAs predicted:        340
Av. tRNA length:        118
Script CPU time:        2.99 s
Scan CPU time:          24.82 s
Scan speed:             2614.4 Kbp/sec

First pass search(es) ended: Wed Dec 28 19:37:26 CET 2011

Cove Stats:
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Candidate tRNAs read:     340
Cove-confirmed tRNAs:     86
Bases scanned by covels:  45182
% seq scanned by covels:  0.1 %
Script CPU time:          0.62 s
Cove CPU time:            60.11 s
Scan speed:               751.7 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 19:38:28 CET 2011

Summary
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Overall scan speed: 732889.0 bp/sec

tRNAs decoding Standard 20 AA:              84
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      2
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Total tRNAs:                                86

tRNAs with introns:     	4

| Tyr-GTA: 4 |

Isotype / Anticodon Counts:

Ala   : 6	  AGC: 2       GGC:         CGC: 3       TGC: 1     
Gly   : 6	  ACC:         GCC: 4       CCC: 1       TCC: 1     
Pro   : 5	  AGG: 2       GGG:         CGG: 2       TGG: 1     
Thr   : 7	  AGT: 4       GGT:         CGT: 2       TGT: 1     
Val   : 5	  AAC: 2       GAC:         CAC: 2       TAC: 1     
Ser   : 5	  AGA: 1       GGA:         CGA: 1       TGA: 1       ACT:         GCT: 2     
Arg   : 9	  ACG: 5       GCG:         CCG: 1       TCG: 1       CCT: 1       TCT: 1     
Leu   : 8	  AAG: 3       GAG:         CAG: 2       TAG: 1       CAA: 1       TAA: 1     
Phe   : 2	  AAA:         GAA: 2                               
Asn   : 3	  ATT:         GTT: 3                               
Lys   : 5	                            CTT: 4       TTT: 1     
Asp   : 3	  ATC:         GTC: 3                               
Glu   : 3	                            CTC: 2       TTC: 1     
His   : 2	  ATG:         GTG: 2                               
Gln   : 4	                            CTG: 3       TTG: 1     
Ile   : 3	  AAT: 2       GAT:                      TAT: 1     
Met   : 4	                            CAT: 4                  
Tyr   : 2	  ATA:         GTA: 2                               
Supres: 0	                            CTA:         TTA:       
Cys   : 1	  ACA:         GCA: 1                               
Trp   : 1	                            CCA: 1                  
SelCys: 0	                                         TCA: