tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 19:48:31 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/I.multifiliis_strain_G5/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/I.multifiliis_strain_G5.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/I.multifiliis_strain_G5_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         2017
Seqs w/at least 1 hit:  140
Bases read:             48799969 (x2 for both strands)
Bases in tRNAs:         13410
tRNAs predicted:        169
Av. tRNA length:        79
Script CPU time:        6.21 s
Scan CPU time:          29.26 s
Scan speed:             3335.6 Kbp/sec

First pass search(es) ended: Wed Dec 28 19:49:14 CET 2011

Cove Stats:
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Candidate tRNAs read:     169
Cove-confirmed tRNAs:     149
Bases scanned by covels:  15771
% seq scanned by covels:  0.0 %
Script CPU time:          0.28 s
Cove CPU time:            18.51 s
Scan speed:               852.0 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 19:49:33 CET 2011

Summary
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Overall scan speed: 1798745.6 bp/sec

tRNAs decoding Standard 20 AA:              138
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        8
tRNAs with undetermined/unknown isotypes:   1
Predicted pseudogenes:                      2
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Total tRNAs:                                149

tRNAs with introns:     	4

| Tyr-GTA: 4 |

Isotype / Anticodon Counts:

Ala   : 9	  AGC: 5       GGC:         CGC: 1       TGC: 3     
Gly   : 9	  ACC:         GCC: 5       CCC:         TCC: 4     
Pro   : 5	  AGG: 2       GGG:         CGG: 1       TGG: 2     
Thr   : 9	  AGT: 4       GGT:         CGT: 2       TGT: 3     
Val   : 10	  AAC: 5       GAC:         CAC: 1       TAC: 4     
Ser   : 10	  AGA: 4       GGA:         CGA: 1       TGA: 2       ACT:         GCT: 3     
Arg   : 9	  ACG: 1       GCG:         CCG: 1       TCG: 1       CCT: 1       TCT: 5     
Leu   : 13	  AAG: 3       GAG:         CAG: 1       TAG: 2       CAA: 2       TAA: 5     
Phe   : 4	  AAA:         GAA: 4                               
Asn   : 7	  ATT:         GTT: 7                               
Lys   : 11	                            CTT: 3       TTT: 8     
Asp   : 5	  ATC:         GTC: 5                               
Glu   : 8	                            CTC: 1       TTC: 7     
His   : 3	  ATG:         GTG: 3                               
Gln   : 3	                            CTG: 1       TTG: 2     
Ile   : 7	  AAT: 5       GAT:                      TAT: 2     
Met   : 5	                            CAT: 5                  
Tyr   : 4	  ATA:         GTA: 4                               
Supres: 8	                            CTA: 2       TTA: 6     
Cys   : 4	  ACA:         GCA: 4                               
Trp   : 3	                            CCA: 3                  
SelCys: 0	                                         TCA: