tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 19:40:10 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/F.cylindrus/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/F.cylindrus.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/F.cylindrus_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         271
Seqs w/at least 1 hit:  108
Bases read:             80540407 (x2 for both strands)
Bases in tRNAs:         77295
tRNAs predicted:        723
Av. tRNA length:        106
Script CPU time:        8.60 s
Scan CPU time:          56.87 s
Scan speed:             2832.4 Kbp/sec

First pass search(es) ended: Wed Dec 28 19:41:19 CET 2011

Cove Stats:
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Candidate tRNAs read:     723
Cove-confirmed tRNAs:     163
Bases scanned by covels:  87417
% seq scanned by covels:  0.1 %
Script CPU time:          1.37 s
Cove CPU time:            106.17 s
Scan speed:               823.4 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 19:43:08 CET 2011

Summary
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Overall scan speed: 931049.2 bp/sec

tRNAs decoding Standard 20 AA:              156
Selenocysteine tRNAs (TCA):                 2
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   1
Predicted pseudogenes:                      4
                                            -------
Total tRNAs:                                163

tRNAs with introns:     	13

| Ser-CGA: 2 | Ser-GCT: 2 | Met-CAT: 3 | Tyr-GTA: 6 |

Isotype / Anticodon Counts:

Ala   : 13	  AGC: 7       GGC:         CGC: 2       TGC: 4     
Gly   : 13	  ACC: 2       GCC: 6       CCC:         TCC: 5     
Pro   : 10	  AGG: 2       GGG:         CGG: 2       TGG: 6     
Thr   : 10	  AGT: 6       GGT:         CGT: 1       TGT: 3     
Val   : 8	  AAC: 4       GAC:         CAC: 2       TAC: 2     
Ser   : 10	  AGA: 4       GGA:         CGA: 1       TGA: 2       ACT:         GCT: 3     
Arg   : 11	  ACG: 2       GCG:         CCG:         TCG: 4       CCT: 2       TCT: 3     
Leu   : 13	  AAG: 3       GAG:         CAG:         TAG: 2       CAA: 3       TAA: 5     
Phe   : 6	  AAA:         GAA: 6                               
Asn   : 4	  ATT:         GTT: 4                               
Lys   : 18	                            CTT: 4       TTT: 14    
Asp   : 10	  ATC:         GTC: 10                              
Glu   : 5	                            CTC: 1       TTC: 4     
His   : 2	  ATG:         GTG: 2                               
Gln   : 6	                            CTG: 1       TTG: 5     
Ile   : 4	  AAT: 4       GAT:                      TAT:       
Met   : 5	                            CAT: 5                  
Tyr   : 6	  ATA:         GTA: 6                               
Supres: 0	                            CTA:         TTA:       
Cys   : 0	  ACA:         GCA:                                 
Trp   : 2	                            CCA: 2                  
SelCys: 2	                                         TCA: 2