tRNAscan-SE v.1.23 (April 2002) scan results (on host )
Started: Wed Dec 28 19:35:43 CET 2011

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Sequence file(s) to search:  /users/rg/didac/GENOMES/C.fasciculata/genome.fa
Search Mode:                 Eukaryotic
Results written to:          /users/rg/didac/STUDENTS_PROJECT/tRNA/C.fasciculata.txt
Output format:               Tabular
Searching with:              tRNAscan + EufindtRNA -> Cove
Covariance model:            TRNA2-euk.cm
tRNAscan parameters:         Strict
EufindtRNA parameters:       Relaxed (Int Cutoff= -32.1)
Search statistics saved in:  /users/rg/didac/STUDENTS_PROJECT/tRNA/C.fasciculata_summary.txt
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First-pass (tRNAscan/EufindtRNA) Stats:
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Sequences read:         1089
Seqs w/at least 1 hit:  132
Bases read:             37048325 (x2 for both strands)
Bases in tRNAs:         24916
tRNAs predicted:        257
Av. tRNA length:        96
Script CPU time:        4.61 s
Scan CPU time:          29.24 s
Scan speed:             2534.1 Kbp/sec

First pass search(es) ended: Wed Dec 28 19:36:21 CET 2011

Cove Stats:
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Candidate tRNAs read:     257
Cove-confirmed tRNAs:     125
Bases scanned by covels:  28502
% seq scanned by covels:  0.0 %
Script CPU time:          0.42 s
Cove CPU time:            34.74 s
Scan speed:               820.4 bp/sec

Cove analysis of tRNAs ended: Wed Dec 28 19:36:57 CET 2011

Summary
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Overall scan speed: 1073708.9 bp/sec

tRNAs decoding Standard 20 AA:              125
Selenocysteine tRNAs (TCA):                 0
Possible suppressor tRNAs (CTA,TTA):        0
tRNAs with undetermined/unknown isotypes:   0
Predicted pseudogenes:                      0
                                            -------
Total tRNAs:                                125

tRNAs with introns:     	5

| Tyr-GTA: 5 |

Isotype / Anticodon Counts:

Ala   : 6	  AGC: 4       GGC:         CGC: 2       TGC:       
Gly   : 7	  ACC:         GCC: 4       CCC: 1       TCC: 2     
Pro   : 7	  AGG: 3       GGG:         CGG: 3       TGG: 1     
Thr   : 8	  AGT: 4       GGT:         CGT: 2       TGT: 2     
Val   : 11	  AAC: 5       GAC:         CAC: 4       TAC: 2     
Ser   : 6	  AGA:         GGA:         CGA: 2       TGA: 2       ACT:         GCT: 2     
Arg   : 14	  ACG: 11      GCG:         CCG: 1       TCG: 2       CCT:         TCT:       
Leu   : 10	  AAG: 2       GAG:         CAG: 4       TAG: 2       CAA: 1       TAA: 1     
Phe   : 1	  AAA:         GAA: 1                               
Asn   : 3	  ATT:         GTT: 3                               
Lys   : 9	                            CTT: 7       TTT: 2     
Asp   : 5	  ATC:         GTC: 5                               
Glu   : 5	                            CTC: 4       TTC: 1     
His   : 2	  ATG:         GTG: 2                               
Gln   : 6	                            CTG: 4       TTG: 2     
Ile   : 7	  AAT: 5       GAT:                      TAT: 2     
Met   : 7	                            CAT: 7                  
Tyr   : 5	  ATA:         GTA: 5                               
Supres: 0	                            CTA:         TTA:       
Cys   : 3	  ACA:         GCA: 3                               
Trp   : 3	                            CCA: 3                  
SelCys: 0	                                         TCA: