TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74761781|sp|Q9NX07.1|TSAP1_HUMAN RecName: Full=tRNA
selenocysteine 1-associated protein 1; AltName: Full=SECp43; AltName:
Full=tRNA selenocysteine-associated protein 1
         (287 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241480|gb|AFNH01002425.1| Gregarina niphandrodes asmbl.316...    58   3e-09
gi|338242832|gb|AFNH01001749.1| Gregarina niphandrodes asmbl.254...    45   2e-05
gi|338240694|gb|AFNH01002819.1| Gregarina niphandrodes asmbl.353...    44   5e-05
gi|338241021|gb|AFNH01002656.1| Gregarina niphandrodes asmbl.338...    44   5e-05

>gi|338241480|gb|AFNH01002425.1| Gregarina niphandrodes asmbl.3167,
            whole genome shotgun sequence
          Length = 7306

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 1/178 (0%)
 Frame = -2

Query: 3    ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
            A+L+ G+L+  + E+ +       G  V  V + R+++TG   GY F+E+     AE  +
Sbjct: 4506 ATLYAGNLDRRVSEDVLWELCIQAGP-VKHVHVPRDKITGQHQGYGFIEYEQEVDAEYAI 4330

Query: 63   HKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPS 122
               +   L G    K  +LN A   K+       +LFVG+L P VD+  L+E F   + +
Sbjct: 4329 RIFSTTCLYG----KPLRLNKAAQDKKMFEVGA-NLFVGNLAPQVDERKLFETFA-AFGN 4168

Query: 123  CRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
                K++ D +T  S+G+GF+ + +      A+    G   L  K + ++ A  K S+
Sbjct: 4167 VTSAKIMKDPETSESRGFGFISYDNFQSADSAIKTLSGQF-LSDKQITVTYAFKKDSQ 3997


>gi|338242832|gb|AFNH01001749.1| Gregarina niphandrodes asmbl.2546,
            whole genome shotgun sequence
          Length = 14330

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
 Frame = -3

Query: 4    SLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
            +LW+GDLE + DE +I   F     ++V SVK+ R++      GY FV+F     AE+ L
Sbjct: 4866 TLWIGDLERWEDEEYIYAYFEQYFPQSVTSVKVARDKDQQRSLGYGFVDFCSREVAERVL 4687

Query: 63   HKINGKPLPGATPAKRFKLNYA 84
                  P+   +  +RFKL +A
Sbjct: 4686 ---AAAPVFKRSHGRRFKLTWA 4630


>gi|338240694|gb|AFNH01002819.1| Gregarina niphandrodes asmbl.3533,
           whole genome shotgun sequence
          Length = 14290

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 37/114 (32%), Positives = 53/114 (46%)
 Frame = +2

Query: 55  LATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYE 114
           L  AE+ L  +N  P+ G      +     T  K    S   +LFV +L   VD   L++
Sbjct: 23  LYVAERALETLNHTPIKGNPCRIMWSQRDPTVRK----STSGNLFVRNLDRGVDSRALHD 190

Query: 115 FFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 168
            F  ++ +    KVV D+ G SKGYGFV F  +     A+    G + +GSK V
Sbjct: 191 TF-SLFGNILSCKVVADEQGRSKGYGFVHFESDEAAALAVDRVNG-MKIGSKEV 346


>gi|338241021|gb|AFNH01002656.1| Gregarina niphandrodes asmbl.3381,
             whole genome shotgun sequence
          Length = 15051

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -1

Query: 4     SLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCL 62
             +LW+GDLE + DE +I   F     ++V SVKI R+R      GY F++F +   AE+ L
Sbjct: 13221 TLWIGDLERWEDEEYIYNYFEQYFPQSVTSVKIARDRDQQRSLGYGFIDFVNREVAERVL 13042

Query: 63    HKINGKPLPGATPAKRFKLNYA 84
                        +  +RFKL +A
Sbjct: 13041 ASAAAFK---RSHGRRFKLTWA 12985


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.317    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,502,743
Number of Sequences: 3680
Number of extensions: 59616
Number of successful extensions: 319
Number of sequences better than 1.0e-04: 4
Number of HSP's better than  0.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of query: 287
length of database: 5,120,956
effective HSP length: 94
effective length of query: 193
effective length of database: 4,775,036
effective search space: 921581948
effective search space used: 921581948
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 100 (43.1 bits)