TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced ...    40   7e-07

>gi|328874319|gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic
               scaffold Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun
               sequence
          Length = 2750715

 Score = 39.7 bits (91), Expect(2) = 7e-07
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
 Frame = -2

Query: 173     GFCQLFLDCPLETCLQRNGQRPQA----------LPPETIHLMGRKLEKPNPEKNAWEHN 222
               GF  ++++  ++ C   N +R +           +  ETI  M R+ E PN     WE N
Sbjct: 1002062 GFGVIYINRDVDDCKVYNIEREKRDDLKLLPLIKVTGETIDKMNREFEPPNNPNIKWEFN 1001883

Query: 223     SLTIPSPACASEASL--------EVTDLLLTALENPVKYAEDNMEQKDTDRIICSTNILH 274
               +    +    +  +L        E+ DLL   L         + +Q+  DR +C  N++H
Sbjct: 1001882 NTLTNNNNNNNNNNLDRIESFWNEIVDLLNKQLFVAPSDTIVDTQQRQQDRQVCENNLIH 1001703

Query: 275     KTDQTLRRIVSQTMKE 290
               + D   R +V   + +
Sbjct: 1001702 QLDIATRSVVGTLLSD 1001655



 Score = 31.2 bits (69), Expect(2) = 7e-07
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 148     LVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD 180
               ++LDDNF+ +SMRY  Y++ R      C L ++
Sbjct: 1002216 ILLDDNFHLKSMRYPYYRICRDCM*SNCWLLVN 1002118


  Database: D.fasciculatum/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,214,128
Number of Sequences: 25
Number of extensions: 201495
Number of successful extensions: 902
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 177
length of query: 348
length of database: 10,339,736
effective HSP length: 101
effective length of query: 247
effective length of database: 10,337,211
effective search space: 2553291117
effective search space used: 2553291117
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)