T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
PHYCAscaffold_5   :  99
gi|267844904|re   :  99
cons              :  99

PHYCAscaffold_5   MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEG
gi|267844904|re   MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENG

cons              ** :* * .*:*:..:**:**  * **:* *:  ** : : *::*


PHYCAscaffold_5   WDDASVEMLLQTLSAMDSNNFQGSAGAGEREARVFSPMVARRHFR
gi|267844904|re   WDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR

cons              **::::*::*: *: ****** *..*.****.** *.:*****:*


PHYCAscaffold_5   LAHGVGRSGDVAAVQPKAAGSSLLVQLANSLAKDVLRLAGMRAVQ
gi|267844904|re   FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVA

cons              : **:*****::************ :::***. *:::***:::* 


PHYCAscaffold_5   AALVLPVATGMSLTLVLLQLNELKPGAHYVIWPRIDQKSCFKSIL
gi|267844904|re   NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI

cons               .:*:*:******** :* *.. :* *:*:*************::


PHYCAscaffold_5   AAGLTPLVLPNVLVEEEGGYLKTDLAGMAELIDQYGADSILAVMS
gi|267844904|re   TAGFEPVVIENVL---EGDELRTDLKAVEAKVQELGPDCILCIHS

cons              :**: *:*: ***   **. *:*** .:   ::: *.*.**.: *


PHYCAscaffold_5   TTSCFAPRAYDSVQEIAKMCQDRNIAHVINNAYGVQASKCVHEVE
gi|267844904|re   TTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQ

cons              ********. * ::*:* :* : :*.*::*******:***:* ::


PHYCAscaffold_5   LAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAKFYPG
gi|267844904|re   QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG

cons               . ****:**.****************:.. . .:::.::*:***


PHYCAscaffold_5   RASATPTLDFFITMLQM----------------------------
gi|267844904|re   RASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSE

cons              ****:*:**.:**:*.:                            


PHYCAscaffold_5   ---------------------------------------------
gi|267844904|re   AYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSG

cons                                                           


PHYCAscaffold_5   ---------------------------------------------
gi|267844904|re   ARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDV

cons                                                           


PHYCAscaffold_5   ---------------------------------------------
gi|267844904|re   DLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVL

cons                                                           


PHYCAscaffold_5   ------VSS
gi|267844904|re   LDTYQDASS

cons                    .**