TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium transferase [Homo sapiens] (501 letters) Database: L.tarentolae/genome.fa 7267 sequences; 31,598,840 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Lt_contig6577 | | 1 to 12105 285 5e-77 Lt_contig5254 | | 1 to 4927 32 1.4 Lt_contig2385 | | 1 to 3783 30 3.0 Lt_contig6093 | | 1 to 4897 30 3.9 Lt_contig6438 | | 1 to 4115 30 5.1 Lt_contig834 | | 1 to 7497 30 5.1 Lt_contig5806 | | 1 to 8586 29 6.7 >Lt_contig6577 | | 1 to 12105 Length = 12105 Score = 285 bits (729), Expect = 5e-77 Identities = 197/584 (33%), Positives = 278/584 (47%), Gaps = 130/584 (22%) Frame = -3 Query: 1 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAI 60 M+ S E V Y+ G E+ RS ++R +L + +CP+ ++ +EL L +L++ Sbjct: 6691 MDDRSLKLAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEALTDAAIELILRQLSL 6512 Query: 61 MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS 120 MD+NNF + G GEREGRV SALV RH+ HGIGRSGD+ + QPKAAGSSLL KITN Sbjct: 6511 MDTNNFAHHVGGGEREGRVVSALVRMRHFHLTHGIGRSGDLFSEQPKAAGSSLLYKITNV 6332 Query: 121 LVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKA------------------ 162 L+LD+++ AG + A VVPM+TGM+L L + R + Sbjct: 6331 LMLDLLRQAGAPSTAAAVVVPMSTGMTLALVLRCVAKSRTEELMKEAEAVQPQLTVTKDS 6152 Query: 163 ---------------------------------KYIIWPRIDQKSCFKSMITAGFEPVVI 189 +Y+IWPRIDQK+ K + AG PV + Sbjct: 6151 TSAASAAQVQEPSTSEADRAGHDRTSLLVPATPRYVIWPRIDQKTALKCIDAAGLIPVPV 5972 Query: 190 EN--------------VLEGDELRTDLKA--------------VEAKVQEL--------G 213 + D L D + +E +V ++ G Sbjct: 5971 QLRPAVTLARSADPWVSANRDSLGRDKGSTGSPVTPTSSSSLFLECRVDDVAAAVNAVGG 5792 Query: 214 PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG 273 P ++C+ STTSCFAPR+PD +A C IP++VNNAYGVQS + M + R+G Sbjct: 5791 PSQVVCVLSTTSCFAPRLPDNTVGIAQYCKEAGIPYVVNNAYGVQSRRIMTRLDAAQRLG 5612 Query: 274 RIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNG 333 R+D VQS DKNF+VPVGG+II+ + + Q ++ +Y GRAS SP +D+ IT LSLG G Sbjct: 5611 RVDFVVQSGDKNFLVPVGGSIISSSDKARCQAVAALYAGRASMSPIVDLFITALSLGRRG 5432 Query: 334 YKKLLKERKEMFSYLSNQIKKLSEAYNERLL--------------------HTPHNPISL 373 + L +R + L Q+++ + E LL T N IS+ Sbjct: 5431 MQALWSDRYRCRARLIRQLREFARERREVLLVDDTDDKADTVSGSKTIPGTVTARNDISV 5252 Query: 374 AMTLKTLDEHRDK--------------------AVTQLGSMLFTRQVSGARVV-PLGSM- 411 A+T++T K A G+ LF V+G RV+ P S Sbjct: 5251 AVTMRTYGLPTAKVGSSGVQRESAQVEKVANWAAARAFGAQLFRSAVTGPRVITPAPSTP 5072 Query: 412 QTVSGYTFRGFMSHTN-NYPCAYLNAASAIGMKMQDVDLFIKRL 454 T++G TFR + H + PC L A IGM +VD + RL Sbjct: 5071 TTIAGCTFRNYGMHQDWAPPCPLLVIACGIGMSEAEVDALMARL 4940 >Lt_contig5254 | | 1 to 4927 Length = 4927 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1 Query: 157 HKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 H + K +Y +PRI ++CF + IT P V+ +VL Sbjct: 196 HPKTKQRYQRYPRIRVRACFDASITRFSPPFVVRSVL 306 >Lt_contig2385 | | 1 to 3783 Length = 3783 Score = 30.4 bits (67), Expect = 3.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +3 Query: 67 LGNCGVGEREGRVASALVARRHYRFI 92 L CG GER+ VA A+ A R YRF+ Sbjct: 2004 LRRCGGGERDACVAPAIAAIRDYRFL 2081 >Lt_contig6093 | | 1 to 4897 Length = 4897 Score = 30.0 bits (66), Expect = 3.9 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +2 Query: 276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEIS----KMYPGRASASPSLDVLITLLSLG 330 + F+ S D G ++ +GF+D F ++ ++Y A SLD+ LLSLG Sbjct: 356 NVFLPSFDAAVCSSCGVSVFSGFDDLFAADLRGYLPRLYTRAAEVLSSLDLYSILLSLG 532 >Lt_contig6438 | | 1 to 4115 Length = 4115 Score = 29.6 bits (65), Expect = 5.1 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +2 Query: 115 NKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCF 152 N + SL+L + LA +HT V M+ G SL++CF Sbjct: 1217 NDVDGSLLLTFL-LASIHTFVFLVCVAMSVGRSLSVCF 1327 >Lt_contig834 | | 1 to 7497 Length = 7497 Score = 29.6 bits (65), Expect = 5.1 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = -2 Query: 114 LNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRI 170 L ++ SL+L + K+ VHT +CF VP FL+L++K + I R+ Sbjct: 5024 LPPLSFSLILFLFKVCSVHTSVSCFSVP----------FLSLKNKGMSWSHFIDSRV 4884 >Lt_contig5806 | | 1 to 8586 Length = 8586 Score = 29.3 bits (64), Expect = 6.7 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Frame = -1 Query: 153 LTLRHKRPKAKYIIWPRID-QKSCFKSMITA---GFEPVVIENVLEGDELRTDLKAVEAK 208 L+LR + +W R Q CF+ + + G P V E RT L +EA+ Sbjct: 1905 LSLRRSLDSTQRHLWRRGGVQLRCFREIAPSSPRGALPCVPVICCCSREPRTTLLGIEAE 1726 Query: 209 VQELGPDCILCI-HSTTSCFAPRVPDRLEELAVICAN 244 E D + + +S +CF RVP R+E+L +C++ Sbjct: 1725 PLEY--DQLSAVRNSACACFERRVPQRVEDL--VCSS 1627 Database: L.tarentolae/genome.fa Posted date: Nov 21, 2011 7:46 PM Number of letters in database: 31,598,840 Number of sequences in database: 7267 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,114,999 Number of Sequences: 7267 Number of extensions: 292324 Number of successful extensions: 1734 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 700 Number of HSP's successfully gapped in prelim test: 107 Number of HSP's that attempted gapping in prelim test: 971 Number of HSP's gapped (non-prelim): 957 length of query: 501 length of database: 10,532,946 effective HSP length: 104 effective length of query: 397 effective length of database: 9,777,178 effective search space: 3881539666 effective search space used: 3881539666 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 63 (28.9 bits)