TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|267844904|ref|NP_058651.3| O-phosphoseryl-tRNA(Sec) selenium
transferase [Homo sapiens]
         (501 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325188047|emb|FR824205.1| Albugo laibachii Nc14, genomic cont...    34   0.29 
gi|325183295|emb|FR824085.1| Albugo laibachii Nc14, genomic cont...    29   7.2  
gi|325190277|emb|FR824302.1| Albugo laibachii Nc14, genomic cont...    29   7.2  
gi|325187838|emb|FR824198.1| Albugo laibachii Nc14, genomic cont...    29   9.4  

>gi|325188047|emb|FR824205.1| Albugo laibachii Nc14, genomic contig
             CONTIG_160_NC14_v4_58050_242
          Length = 58050

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 31/113 (27%), Positives = 51/113 (45%)
 Frame = +3

Query: 315   SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLA 374
             ++S S    ++ ++ GS   K+L   R      ++N  K   ++    L     +PIS +
Sbjct: 12225 TSSSSFSCFLSSITKGSGLAKEL*ACRMSSLLEIANPFKSGGKSLVNDLNSRSVSPISNS 12404

Query: 375   MTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTN 427
                 T+D+    A   L + L  ++ SG  V+P G +Q VSG T     SH N
Sbjct: 12405 AAFSTMDKIAWVAHALLITCLAKKRFSGGGVLPFG-VQVVSGGTVCCDFSHLN 12560


>gi|325183295|emb|FR824085.1| Albugo laibachii Nc14, genomic contig
             CONTIG_40_NC14_v4_133649_231
          Length = 133649

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +3

Query: 335   KKLLKERKEMFSYLSNQIKKL---SEAYNERLLHTPHNPISLAMTLKTLDEHR 384
             + L  E +EM S + NQ +KL   S++  E    + +N  + AMT++ LDE R
Sbjct: 67752 QNLSHEVREMTSVIQNQTQKLLEVSQSAQENDSASKYNETTDAMTMQVLDELR 67910


>gi|325190277|emb|FR824302.1| Albugo laibachii Nc14, genomic contig
            CONTIG_257_NC14_v4_37389_223
          Length = 37389

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = -1

Query: 177  KSMITAGFEPVVIENVLEGDELRTDLKAVEA--KVQELGPDCILCIHSTTSCFAPR---- 230
            ++ IT  FEP++ + +  GD+   +++ V A  K+       +    S TS FA R    
Sbjct: 5862 RTPITRAFEPIMRKRICNGDKQNEEMRPVPARSKIDAEQKKELHSKSSLTSMFAIRTKNS 5683

Query: 231  VPDRLEELAVICANYDIP 248
             P RL + A++     IP
Sbjct: 5682 APTRLSQPAIVKPLRSIP 5629


>gi|325187838|emb|FR824198.1| Albugo laibachii Nc14, genomic contig
             CONTIG_153_NC14_v4_59437_232
          Length = 59437

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
 Frame = +1

Query: 332   NGYKKLLKERKEMFSYLSNQIK-----------KLSEAYNERLLHTPHNPISLAMT--LK 378
             N YK+ LKE  + F  LS+Q +           K S     RLLH  HN   L  T  +K
Sbjct: 43114 NAYKRHLKEFSDQFELLSSQYRSNASNTTTESMKYSLVELHRLLHQLHNFAILNYTGFIK 43293

Query: 379   TLDEH 383
              L +H
Sbjct: 43294 ILKKH 43308


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,907,057
Number of Sequences: 3816
Number of extensions: 259645
Number of successful extensions: 1316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 743
length of query: 501
length of database: 10,913,379
effective HSP length: 104
effective length of query: 397
effective length of database: 10,516,515
effective search space: 4175056455
effective search space used: 4175056455
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)