TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|332657964|gb|AEE83364.1| selenium-binding protein 2
[Arabidopsis thaliana]
         (487 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338242247|gb|AFNH01002041.1| Gregarina niphandrodes asmbl.281...    30   1.4  
gi|338240535|gb|AFNH01002898.1| Gregarina niphandrodes asmbl.360...    28   7.1  
gi|338241598|gb|AFNH01002366.1| Gregarina niphandrodes asmbl.311...    28   7.1  
gi|338241041|gb|AFNH01002646.1| Gregarina niphandrodes asmbl.337...    28   9.3  
gi|338242722|gb|AFNH01001804.1| Gregarina niphandrodes asmbl.259...    28   9.3  
gi|338242740|gb|AFNH01001795.1| Gregarina niphandrodes asmbl.258...    28   9.3  

>gi|338242247|gb|AFNH01002041.1| Gregarina niphandrodes asmbl.2813,
            whole genome shotgun sequence
          Length = 10920

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +2

Query: 12   SNGKSKGCCKSGPGYATPLAA------MAGPREKLIYVTALYSGTGRDKPDYLA 59
            + G+S+G C SGPG   P AA       A P      +  +  G    KP+ LA
Sbjct: 3701 ATGRSRGLCVSGPGGKCPTAAGR*RRTNASPENSNALMPCVNRGPNLTKPEQLA 3862


>gi|338240535|gb|AFNH01002898.1| Gregarina niphandrodes asmbl.3605,
            whole genome shotgun sequence
          Length = 34762

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 3    TETVLATAVSNGKSKGCCKSGPGYATPLAAMAGPR 37
            T ++ A  V    S GCC  GP +   L++ +G R
Sbjct: 9705 TNSLQAETVGGSWSSGCCPIGPSWRPRLSSTSGSR 9601


>gi|338241598|gb|AFNH01002366.1| Gregarina niphandrodes asmbl.3110,
             whole genome shotgun sequence
          Length = 24708

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 68    PTFSSVIHRLKMPYIGDELHH 88
             PT  +++HRL+ P  GD+ HH
Sbjct: 22890 PTL*TLLHRLQEPEAGDQAHH 22952


>gi|338241041|gb|AFNH01002646.1| Gregarina niphandrodes asmbl.3371,
             whole genome shotgun sequence
          Length = 36982

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 282   GSALSSNMIRFFKNSDDTWSHEVVISVKPL 311
             GSA+  N +  F+N    W+H+ V++V P+
Sbjct: 12563 GSAVLRNPL--FRNRKSVWAHDAVVTVSPI 12646


>gi|338242722|gb|AFNH01001804.1| Gregarina niphandrodes asmbl.2597,
            whole genome shotgun sequence
          Length = 10091

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +1

Query: 126  DPKAPSLYKVVEPKEIAEKTGLAFPHTSHCLASGDMLVSCLGD 168
            DP       V+ P  +   T L F     CLA   +  SCLGD
Sbjct: 9931 DPSRVGCLPVLLPNSLLPDTCLEFCLADSCLADSCLADSCLGD 10059


>gi|338242740|gb|AFNH01001795.1| Gregarina niphandrodes asmbl.2589,
             whole genome shotgun sequence
          Length = 34199

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 83    GDELHHTGWNSCS 95
             GD   HTGWNSCS
Sbjct: 24786 GDGYPHTGWNSCS 24748


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,795,687
Number of Sequences: 3680
Number of extensions: 189156
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 566
length of query: 487
length of database: 5,120,956
effective HSP length: 99
effective length of query: 388
effective length of database: 4,756,636
effective search space: 1845574768
effective search space used: 1845574768
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)