TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|332657964|gb|AEE83364.1| selenium-binding protein 2
[Arabidopsis thaliana]
         (487 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1071  |  | 1 to 673414                                        32   0.95 

>Cf_Contig1071  |  | 1 to 673414
          Length = 673414

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
 Frame = +3

Query: 130    PSLYKVVEPKE----IAEKTGLAFPHTSHCLASGDMLVSCL-----GDKEGNAKGNGFLL 180
              P+++  +EPKE    +A+   L  P  +    +G+ L   +     G  EG  +G+G  +
Sbjct: 580116 PAVHHQLEPKEARLGVAQVLLLRLPRPARSRGAGEALPGAVPHV*EGTGEGGPRGDGQGV 580295

Query: 181    LDSDFNVKSRWDKPGHGPLF 200
              LDS        D+ G G +F
Sbjct: 580296 LDSGDEAAGEDDREGRGDVF 580355


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.319    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,645,275
Number of Sequences: 1089
Number of extensions: 382458
Number of successful extensions: 1831
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 612
length of query: 487
length of database: 12,349,441
effective HSP length: 105
effective length of query: 382
effective length of database: 12,235,096
effective search space: 4673806672
effective search space used: 4673806672
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)