TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                   137   9e-33
T.congo.pschr.5                                                        32   0.54 
T.congo.pschr.7                                                        29   6.0  
T.congo.pschr.11                                                       28   7.8  
T.congo.pschr2                                                         28   7.8  

>TcIL3000_10_v2.embl 
          Length = 3612457

 Score =  137 bits (346), Expect = 9e-33
 Identities = 131/426 (30%), Positives = 195/426 (45%), Gaps = 22/426 (5%)
 Frame = +2

Query: 49      LRTYEYHGADNSLVYK-VLTPMNNFLVKLLPLWLAPNXXXXXXXXXXXXSHTLFVFLCPF 107
               L  Y+Y G+D+ LV + ++ P  NF+V L+P+ +APN            S  + +F   F
Sbjct: 1950464 LAKYKYSGSDSGLVSRYIMQPYWNFIVSLVPMTIAPNAITITGFLMCLSSSLVVMFFYYF 1950643

Query: 108     LVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTM 167
                  + P W  + AA  LF YQTLD +DGKQARRT S SP+G LFDHGC A+      + +
Sbjct: 1950644 QNAEYPSWVWLYAAFCLFCYQTLDAIDGKQARRTNSVSPVGELFDHGCDAILTPFVQLKV 1950823

Query: 168     ASILQMGTTWRTLGFVLSGHFVFIFATWE-YYSGSLELPLYNGPTEGYLIGIALKLVTAV 226
                  L        +  V+S   +F  A WE + +G+L+L   NGPT+G L+   + +VT+ 
Sbjct: 1950824 CCALNTSPRVTFVYMVISSCVLFA-AIWEQFVTGTLDLGYVNGPTDGILLACGIFIVTSF 1951000

Query: 227     VGVGFWNQEMIEGVQNNSLFVIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITS 286
               +    W+  ++ G  N +L    ++IS      V      I  I +V FA   +   +T 
Sbjct: 1951001 LSTSVWDTPIV-GPYNVTL---PSLISGGGGAGVGEETYQICTIRSVLFAMYIVSGVVTI 1951168

Query: 287     VRNALH-----AVRLNQDSVLVAFTRLLPFVVINTL-AGLWALYSPSDIFSTHPRMFLWM 340
               + +  H     +V+    S++VA    LP  V+  L   L+A Y P  I   +P      
Sbjct: 1951169 LNSVSHVIMRPSVQSRGASIIVA----LPTAVLLALHVWLYAAYFP--IHVKYPFALELS 1951330

Query: 341     LGLLNSKLVLHLMLAHLCGEEYHPFRKTLVPIF-YVAGHCAFCMVEGIYDAINEELIVRE 399
                  L S  V  + +A LC   Y  F    V  F + AG  A  M    Y    EE    +
Sbjct: 1951331 FAFLVSYTVTRMTVARLCAMPYSLFNAFYVVTFIFTAGSLAMKM----YFPFEEE----K 1951486

Query: 400     FFFLSLSAAV------------HIVITVVWEVKNVLGVSVFTI-PHSSKFKLKTNSKPAA 446
               +   SL +A             H++ +VV ++   L +SVF+I PH        +SK   
Sbjct: 1951487 YLLSSLGSATVALAALGMWQYFHMIFSVVTQMAYFLRISVFSITPHHD-----VSSKRD* 1951651

Query: 447     KSSUFV 452
                SS FV
Sbjct: 1951652 NSSQFV 1951669



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -1

Query: 106     PFLVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTM 165
               PF     P   +++       Y   DN DG  ARR + +S +G   DHG   +   + T 
Sbjct: 2912302 PFSRVFTPTSLLLLCGFLNLVYCIADNTDGCLARRLRKASNVGEYMDHGLDCVTSLMSTC 2912123

Query: 166     TMASIL 171
                  S++
Sbjct: 2912122 VSMSVI 2912105


>T.congo.pschr.5 
          Length = 1517473

 Score = 32.3 bits (72), Expect = 0.54
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
 Frame = -2

Query: 234     QEMIEGVQNNSLFVIVTMISSCFTLLVKYVGGLIFCIPAVRFA--NLSMFCFITSVRNAL 291
               + M E + N  LF+    +     L    VGG ++   +  F   +L+ +   T + N  
Sbjct: 1053654 RRMEEPIVNGWLFMRYMAVGVYVGLAT--VGGFLWWFLSHGFGWQDLTTYAACTDMTNGT 1053481

Query: 292     HAVRLNQDSVLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLH 351
                 +  N  +       +L  VV+  L  L AL   + +  + P   LW+L  + S L LH
Sbjct: 1053480 CVLLANPQTARAIALSIL--VVVEMLNALNALSENASLIVSRPSSNLWLLAAIFSSLSLH 1053307

Query: 352     LMLAHL 357
               L++ ++
Sbjct: 1053306 LIIMYV 1053289


>T.congo.pschr.7 
          Length = 2148087

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -3

Query: 349     VLHLMLAHLCGEEYHPFRKTLVPIFYVAGHCAFCMVEGIYDAINEELIVREFFFLSLSAA 408
               V+   ++HLCG +  PFR  L     V G     +   + +  N  ++  E+F L L+A 
Sbjct: 1388839 VVLFRVSHLCGTQPAPFRYPLP----VLGKTHN*LRANLKEGKNSSIVTTEYFSL-LNAI 1388675

Query: 409     VHIVITV 415
               +HI+ +V
Sbjct: 1388674 IHIMPSV 1388654


>T.congo.pschr.11 
          Length = 4797796

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +3

Query: 272    AVRFANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLLPFVVINTLAGLWALY--SPSDI 329
              ++ F N + F     +R+   AV       +   TR+L  + ++    +   Y  + S +
Sbjct: 546291 SIVFINTACFMSYARLRSGGGAVVQKDVVWITPRTRILITLKVSLDTYILCSYPRTASLL 546470

Query: 330    FSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPF 365
              +      FLW+L    S  V +L + HLC   + PF
Sbjct: 546471 WPCFSHWFLWLL*SFQSGWVTYLGVIHLCRGSFRPF 546578


>T.congo.pschr2 
          Length = 799489

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -1

Query: 2      SNATYESETAVEASQIHALKQRVRHRSIGDGKSTYFGKYVSQEG-----SEKLRTYEYHG 56
              S+  Y + +A   S     K R+R RS+   +   FG+ +S+EG     +E L+  E +G
Sbjct: 140059 SSTAYSNRSAKAPSVASDAKWRMRQRSLSRLRFILFGELISEEGMGDNKAEVLKFIERYG 139880


  Database: /users/rg/didac/GENOMES/T.congolense/genome.fa
    Posted date:  Sep 29, 2011  4:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,893,928
Number of Sequences: 11
Number of extensions: 207028
Number of successful extensions: 1265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 432
length of query: 457
length of database: 7,429,315
effective HSP length: 101
effective length of query: 356
effective length of database: 7,428,204
effective search space: 2644440624
effective search space used: 2644440624
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)
