TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_29                                                      390   0.0  
PHYCAscaffold_26                                                       99   9e-48
PHYCAscaffold_43                                                      109   7e-24
PHYCAscaffold_25                                                       30   7.5  
PHYCAscaffold_13                                                       30   9.8  

>PHYCAscaffold_29 
          Length = 707326

 Score =  390 bits (1001), Expect(2) = 0.0
 Identities = 212/277 (76%), Positives = 227/277 (81%), Gaps = 24/277 (8%)
 Frame = +2

Query: 197    YYSGSLELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSCF 256
              YYSGSLELP+ NGPTEG LIGIALKL TAVVGV FWN+E+I+GVQNNSLFVIVTMISSCF
Sbjct: 482399 YYSGSLELPIINGPTEGILIGIALKLFTAVVGVDFWNEEIIDGVQNNSLFVIVTMISSCF 482578

Query: 257    TLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLLPFVVINT 316
              TLLVKYV   ++ I  +    LS+  +  SVRNALHAVRLNQDSVLVAFTRLLPF+++NT
Sbjct: 482579 TLLVKYV---LYSIIFIARV*LSVRFY--SVRNALHAVRLNQDSVLVAFTRLLPFLILNT 482743

Query: 317    LAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLV------------------------LHL 352
              LAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLV                        LHL
Sbjct: 482744 LAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVVRPNCLMYYLSERLTLIPTCSNG*LHL 482923

Query: 353    MLAHLCGEEYHPFRKTLVPIFYVAGHCAFCMVEGIYDAINEELIVREFFFLSLSAAVHIV 412
              MLAHLCGEEYHPFRKTLVPIFYVAGHCAFCM+EGIY+AINEELIVREFFFLSL+A VHIV
Sbjct: 482924 MLAHLCGEEYHPFRKTLVPIFYVAGHCAFCMLEGIYEAINEELIVREFFFLSLAAYVHIV 483103

Query: 413    ITVVWEVKNVLGVSVFTIPHSSKFKLKTNSKPAAKSS 449
              ITVVWEVKNVLGVSVFTIP S K K    SKPAAKSS
Sbjct: 483104 ITVVWEVKNVLGVSVFTIP-SPKSK---PSKPAAKSS 483202



 Score =  335 bits (858), Expect(2) = 0.0
 Identities = 166/197 (84%), Positives = 172/197 (87%), Gaps = 1/197 (0%)
 Frame = +1

Query: 1      MSNATYESETAVEASQIHALKQRVRHRSIGDGKSTYFGKYVSQEGSEKLRTYEYHGADNS 60
              MS ATY+  TA+EASQ+HALKQRVRHRS GDGKSTYFGKYVSQEGSEKL TYEYHGADNS
Sbjct: 481747 MSKATYDPPTALEASQVHALKQRVRHRSTGDGKSTYFGKYVSQEGSEKLLTYEYHGADNS 481926

Query: 61     LVYK-VLTPMNNFLVKLLPLWLAPNXXXXXXXXXXXXSHTLFVFLCPFLVGDAPWWAMVV 119
              L+YK VLTPMNNFLV+LLPLWLAPN            +HTLFVFLCP L GDAPWWAMVV
Sbjct: 481927 LIYKHVLTPMNNFLVELLPLWLAPNLITLIGLVLVGGTHTLFVFLCPLLEGDAPWWAMVV 482106

Query: 120    AALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTWRT 179
              A  ALF YQTLDNLDGKQARRTKSSSPLGLLFDHGC ALNVSVGTMTMASILQMGTTWRT
Sbjct: 482107 AGAALFGYQTLDNLDGKQARRTKSSSPLGLLFDHGCDALNVSVGTMTMASILQMGTTWRT 482286

Query: 180    LGFVLSGHFVFIFATWE 196
              LGFVLS HFVFIFATWE
Sbjct: 482287 LGFVLSAHFVFIFATWE 482337


>PHYCAscaffold_26 
          Length = 730565

 Score = 99.4 bits (246), Expect(4) = 9e-48
 Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
 Frame = -2

Query: 184    LSGHFVFIFATWE-YYSGSLELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMI--EGV 240
              L+   VF  ATWE YY+G+L LP+ NGP EG LI  ++ + TA+VG   W Q  I    +
Sbjct: 680641 LAPAMVFFMATWEEYYTGTLALPIINGPNEGLLIMYSIYIGTAIVGPTVWTQPNILFPDL 680462

Query: 241    QNNSLFVIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDS 300
               NN +FV++T+ S+    L     G ++        NL++         A+ ++      
Sbjct: 680461 NNNHVFVLITITSAIGQCLFS---GELYVFIYFFAKNLTVCAVFRVAIVAIRSMERKAKD 680291

Query: 301    VLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVL 350
                 A   + PF+ +  L+ LW L+SPSD+F+ HPR+ +W +G + +K+ L
Sbjct: 680290 GAAALFGITPFIALVFLSALWVLWSPSDVFTDHPRLLIWTVGFVFAKVWL 680141



 Score = 86.3 bits (212), Expect(4) = 9e-48
 Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
 Frame = -1

Query: 40     YVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLVK-LLPLWLAPNXXXXXXXXXXXXS 97
              YV++EG + +  Y Y G+D SL+Y  V++P   +LV  +L   LAPN            S
Sbjct: 681203 YVTEEGVKHILAYRYSGSDASLLYNHVISPAAQWLVDHVLSPRLAPNAITIGALSLVILS 681024

Query: 98     HTL---------------------FVFLCPFLVGDAPWWAMVVAALALFTYQTLDNLDGK 136
              H +                     F+ L     G +    +    L +  YQ LD  DGK
Sbjct: 681023 HVIMLW*GCSKSFNR*KVKTKVFCFL*LLAEYGGRSTTMGVCQCRLLITVYQILDVADGK 680844

Query: 137    QARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTW 177
              QAR+T +SSPLGLLFDHGC ALNV V   T AS + +G T+
Sbjct: 680843 QARKTGNSSPLGLLFDHGCDALNVVVSACTFASTIMLGPTY 680721



 Score = 34.7 bits (78), Expect(4) = 9e-48
 Identities = 14/38 (36%), Positives = 26/38 (68%)
 Frame = -2

Query: 393    EELIVREFFFLSLSAAVHIVITVVWEVKNVLGVSVFTI 430
              E  +V+ FF +SLSA VH++  +  E+ ++LG+ +F +
Sbjct: 679885 ESTVVQLFFVISLSAYVHMIYFLSTELASILGIRIFKV 679772



 Score = 31.2 bits (69), Expect(4) = 9e-48
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 348    LVLHLMLAHLCGEEYHPFRKTLVPIFYVAGHCAFCMVEGI 387
              +V+H+ML+H+C E Y   RKT    F +    +F +V G+
Sbjct: 680075 MVMHMMLSHMCEEPYWLLRKT----FLIQLVVSFLLVAGL 679968


>PHYCAscaffold_43 
          Length = 531961

 Score =  109 bits (273), Expect = 7e-24
 Identities = 85/309 (27%), Positives = 135/309 (43%), Gaps = 30/309 (9%)
 Frame = +2

Query: 65     VLTPMNNFLVKLLPLWLAPNXXXXXXXXXXXXSHTLFVFLCPFLVGDAPWWAM------- 117
              VL     + V+ LP+W+APN            +  + ++  P      P W         
Sbjct: 508076 VLNHFWTYSVQFLPIWMAPNLVTMIGTVAMMLTTVVQLYYAPHFSEICPTWVCFILRDHY 508255

Query: 118    -------------------VVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVAL 158
                                 +++A  LF YQT+D LDGKQARRT +SSPLG LFDHGC AL
Sbjct: 508256 CY*SLYSHNSFCFELL*VYILSAFGLFFYQTMDALDGKQARRTGASSPLGQLFDHGCDAL 508435

Query: 159    NVSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFATW-EYYSGSLELPL-YNGPTEGYLI 216
                    ++ A+  Q+G   R    + S    F  A W EY++G +     + G TEG L 
Sbjct: 508436 CTVFNVLSAAATCQVGAGLRAYVALSSVSIAFYLAQWEEYHTGVMSCGNGFFGVTEGQLT 508615

Query: 217    GIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSCFTLLVKYVGGLIFCIPAVRFA 276
               +A+ LV A+ G GFW  E+       + F + T            +G L+     + + 
Sbjct: 508616 LVAVHLVAALFGTGFWTAEL----PFETPFPVTT--------TDVLIGALVASNVLLAYG 508759

Query: 277    NLSMFCFITSVRNALHAVRLNQDSVL--VAFTRLLPFVVINTLAGLWALYSPSDIFSTHP 334
              N+S    + +  +A+    L    +   +A  +L+P  ++  L  LW     +  ++ +P
Sbjct: 508760 NISH--VLRAAPDAIPRDELGNKHISKPLAMIQLIPIGILLALGSLWICGPDAVNYANYP 508933

Query: 335    RMFLWMLGL 343
               +FL+ LG+
Sbjct: 508934 VLFLFPLGI 508960


>PHYCAscaffold_25 
          Length = 841216

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 292    HAVRLNQDSVLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRMF 337
              H  RL+    +  F+ L+ F + N+    W   S S   + HPR+F
Sbjct: 677128 HCPRLHMPPAIQRFSNLMVFHIYNSTVVEWGTNSNSITATAHPRLF 677265


>PHYCAscaffold_13 
          Length = 1060349

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 321    WALYSPSDIFSTHPR-MFLWMLGLLNSKLVLHLMLAH 356
              W L     ++++  R  F+ +L LLN K VLHL  AH
Sbjct: 750436 WELSQKPSVYTSEERHSFVCVLALLNKKAVLHLGTAH 750326


  Database: /users/rg/didac/GENOMES/P.capsici/genome.fa
    Posted date:  Sep 30, 2011 12:21 AM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,216,210
Number of Sequences: 917
Number of extensions: 535612
Number of successful extensions: 2998
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2414
Number of HSP's gapped (non-prelim): 1386
length of query: 457
length of database: 21,341,249
effective HSP length: 108
effective length of query: 349
effective length of database: 21,242,213
effective search space: 7413532337
effective search space used: 7413532337
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)
