TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig4414 |  | 1 to 2792                                          132   7e-31
Lt_contig1495 |  | 1 to 10912                                          36   0.064
Lt_contig5838 |  | 1 to 2919                                           33   0.32 
Lt_contig5266 |  | 1 to 16417                                          32   0.71 
Lt_contig6254 |  | 1 to 24173                                          30   2.7  
Lt_contig9 |  | 1 to 21528                                             30   2.7  
Lt_contig1242 |  | 1 to 4702                                           29   6.0  
Lt_contig1389 |  | 1 to 19664                                          29   7.8  

>Lt_contig4414 |  | 1 to 2792
          Length = 2792

 Score =  132 bits (331), Expect = 7e-31
 Identities = 119/424 (28%), Positives = 192/424 (45%), Gaps = 11/424 (2%)
 Frame = +3

Query: 21   KQRVRHRSIGDGKSTYFGKYVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLVKLLPL 79
            K   RH+SI   K+    +Y+       LR Y+Y G D S++ + VL P  NF+V L+P+
Sbjct: 1476 KPTARHQSINPLKN----EYIPPVYLPNLRKYKYSGTDFSILTQYVLQPYWNFVVNLVPM 1643

Query: 80   WLAPNXXXXXXXXXXXXSHTLFVFLCPFLVGDAPWWAMVVAALALFTYQTLDNLDGKQAR 139
             +APN            S    V+   F  G  P W++  AA ALFTYQTLD +DGKQAR
Sbjct: 1644 TIAPNRITFTGFLIGMSSAAFLVYFYFFEGGVYPSWSLYYAAFALFTYQTLDAIDGKQAR 1823

Query: 140  RTKSSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFATWEYYS 199
            RT + SPLG LFDHGC A       ++++    M    R    V+S   +F     ++ +
Sbjct: 1824 RTGTCSPLGELFDHGCDAFLTPFVLLSVSLATYMDPVERFWLLVISSMSLFTVIWEQFST 2003

Query: 200  GSLELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSC-FTL 258
            G+ EL   +GP+EG ++   L +++A+ G   W+   +          +  +   C  TL
Sbjct: 2004 GTFELGYISGPSEGIILNCVLFILSAMYGESIWDASAVGPYDVAYPAALSWLFPGCNGTL 2183

Query: 259  LVKYVGGLIFCIPAVRFANLSMFCFITSVRNALH-AVRLNQDSVLVA-FTRLLPFVVINT 316
             ++ +  ++F +         + C  T V N LH A+R    +  VA    ++P + I  
Sbjct: 2184 HIESIRSVLFLL-------FVILCPFTMVVNVLHMALRPTVHTSKVAPVLAVVPILAITA 2342

Query: 317  LAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPFRKTLVPIFYVA 376
            L     +  P ++    P +      LL S  V  L LA L    Y       + + ++A
Sbjct: 2343 LMVHVFVVFP-NVTVRFPFVMELSYSLLMSITVTRLTLARLSIMPYRTVNWHFI-LLFIA 2516

Query: 377  GHCAFCMVEGIYDAINEELIVREFFF----LSLSAAV---HIVITVVWEVKNVLGVSVFT 429
               A  M      + + EL+     +    LS+ AA+   H++ + + ++   L +S+  
Sbjct: 2517 LSTASAMHYAAEASASHELVETVLGWTLTGLSVLAAMQYGHMITSALTQMARYLSISIMN 2696

Query: 430  IPHS 433
            I  S
Sbjct: 2697 IKPS 2708


>Lt_contig1495 |  | 1 to 10912
          Length = 10912

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
 Frame = -2

Query: 104   LCPFLVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHG--CVA--LN 159
             + P L   +P   +++       Y   DN DG+ ARR K +S +G   DHG  CV   L+
Sbjct: 10098 MTPILPFMSPSLMLILCGSLNLLYCVADNTDGRLARRDKKTSVIGEYLDHGLDCVTSLLS 9919

Query: 160   VSVGTMTMASILQMGTTWRTLGFV 183
                    + S+  M  T   + FV
Sbjct: 9918  SCCAFALLGSLCNMAITVCLIAFV 9847


>Lt_contig5838 |  | 1 to 2919
          Length = 2919

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 19/58 (32%), Positives = 31/58 (53%)
 Frame = +2

Query: 116 AMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQM 173
           A V+A L L    T  +LDG  ARR +S++ LG +F   C ++      +T+  + Q+
Sbjct: 644 ATVLAILLLVISITCGSLDGVHARRCRSATSLGDIFSRICSSMARIFMALTLLEVFQI 817


>Lt_contig5266 |  | 1 to 16417
          Length = 16417

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 331  STHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPF 365
            S HPRM    L  ++SK++  L+ + +CG +YH F
Sbjct: 7988 SVHPRMLPLTLLSVSSKIL*FLLTSSMCGSQYHLF 8092


>Lt_contig6254 |  | 1 to 24173
          Length = 24173

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -3

Query: 321   WALYSPSDIFSTHPRMFLW-MLGLLNSKLVLHLMLA---HLC 358
             WA  SPS  F + P  +LW +LGL ++ L L  ++    HLC
Sbjct: 14160 WATLSPSSQFGSSPMGYLW*LLGLTDTYLWLRCIVELCWHLC 14035


>Lt_contig9 |  | 1 to 21528
          Length = 21528

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 379   CAFCMVEGIYDAINEELIVREFFFLSLSAAVHIVITVVWEVKNVLGVSVFTIPHSS 434
             CA  ++     A++  ++VR F  LSLS    +V +++  V +V   S  T+PH+S
Sbjct: 17097 CAKHVIGQTCPAVSSLIVVRCFISLSLSYWTCLVCSLLRFVPSVYSTSPTTVPHTS 17264


>Lt_contig1242 |  | 1 to 4702
          Length = 4702

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/82 (25%), Positives = 35/82 (42%)
 Frame = +3

Query: 276  ANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPR 335
            A+++ F   T + N    V  N  +       +L  VV+  L  L AL     +    P 
Sbjct: 3564 ADITSFTTCTDMSNPKCVVLENPQTARAIALSIL--VVVEMLNALNALSENQSLVVIRPA 3737

Query: 336  MFLWMLGLLNSKLVLHLMLAHL 357
               W++  + S LVLHL + ++
Sbjct: 3738 TNKWLIAAICSSLVLHLTIMYI 3803


>Lt_contig1389 |  | 1 to 19664
          Length = 19664

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 351   HLMLAHLCGEEYHPFRKTLVPIFYV 375
             HL+L HLCG   H   + + P F+V
Sbjct: 15528 HLLLRHLCGGHLHGCLRQVKPFFFV 15454


  Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa
    Posted date:  Sep 30, 2011 12:11 AM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,374,527
Number of Sequences: 7267
Number of extensions: 285627
Number of successful extensions: 1784
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 957
length of query: 457
length of database: 10,532,946
effective HSP length: 103
effective length of query: 354
effective length of database: 9,784,445
effective search space: 3463693530
effective search space used: 3463693530
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
