TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL984333.1| Ichthyophthirius multifiliis unplaced genomic sca...   108   2e-23
gb|GL983202.1| Ichthyophthirius multifiliis unplaced genomic sca...    66   9e-11
gb|GL983216.1| Ichthyophthirius multifiliis unplaced genomic sca...    62   2e-09
gb|GL983469.1| Ichthyophthirius multifiliis unplaced genomic sca...    59   1e-08
gb|GL984040.1| Ichthyophthirius multifiliis unplaced genomic sca...    40   2e-05
gb|GL984009.1| Ichthyophthirius multifiliis unplaced genomic sca...    48   3e-05
gb|GL984180.1| Ichthyophthirius multifiliis unplaced genomic sca...    46   8e-05
gb|GL983199.1| Ichthyophthirius multifiliis unplaced genomic sca...    30   5.7  
gb|GL983904.1| Ichthyophthirius multifiliis unplaced genomic sca...    29   9.7  

>gb|GL984333.1| Ichthyophthirius multifiliis unplaced genomic scaffold
             scaff_1120509251372, whole genome shotgun sequence
          Length = 51126

 Score =  108 bits (269), Expect = 2e-23
 Identities = 99/415 (23%), Positives = 183/415 (44%), Gaps = 24/415 (5%)
 Frame = -2

Query: 40    YVSQEGSEKLRTYEYHGADNSLVYKVL-TPMNNFLVK-LLPLWLAPNXXXXXXXXXXXXS 97
             Y+S +G E +++++Y G  +S+ Y    +P+ ++LVK   P +LAPN            +
Sbjct: 39119 YISTQGEEGIKSFKYKGGSDSIFYSYFWSPLCDYLVKNYFPSYLAPNSITLIGFLIHLVA 38940

Query: 98    HTLFVFLCPFLVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVA 157
             H + ++  P L    P W   + + +L TY  LDN DGK AR T SSSPLG+LFDHGC A
Sbjct: 38939 HIIVLYYSPDLK*TLP*WLCFLLSFSLLTY*ILDNCDGK*ARATGSSSPLGMLFDHGCDA 38760

Query: 158   LNVSVGTMTMASILQMGTTWRTLGF--------------------VLSGHFVFIFATWEY 197
             L   + T+  A++ +    ++ L +                    +++GH   +   + Y
Sbjct: 38759 LTTWIVTLNTAAVFK----YKKLHYYIIQFI*LD*FHSF*ECGVNIIAGHLD*VKYLYIY 38592

Query: 198   YSGSLELPLY-NGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSCF 256
                 ++   Y N   EG ++G  +  +T V G   W  ++     N  L +   +I  C 
Sbjct: 38591 I*LKIKQKGYINAIDEGLVLGELIYFLTGVFG**MWGWQLF----NTGLDLGHCLIYIC- 38427

Query: 257   TLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLLPFVVINT 316
              +++  +  + F        N S+F                    L A  +L+  +++N 
Sbjct: 38426 -MIISIL*SI*FTNDMY*KVNFSIF--------------------LNAIGKLVCLLLLNI 38310

Query: 317   LAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPFRKTLVPI-FYV 375
                   L++   +   +     + L  + SK++ HL +AH+  E +  +R + V +    
Sbjct: 38309 TFISLYLFNSKSLIDMYLIPIYYSLAFVWSKIITHL*VAHIT*EPFD*WRYSFVFVCISF 38130

Query: 376   AGHCAFCMVEGIYDAINEELIVREFFFLSLSAAVHIVITVVWEVKNVLGVSVFTI 430
               +  +C V G Y  ++   ++    FL++   +H +  V   + +VLG+ +F I
Sbjct: 38129 TVNSMYCYV*GEY-LVDMVSLIYFNLFLAVVCYMHFIYCVFNHIADVLGIYIFYI 37968


>gb|GL983202.1| Ichthyophthirius multifiliis unplaced genomic scaffold
            scaff_1120509249686, whole genome shotgun sequence
          Length = 139681

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
 Frame = -3

Query: 113  PWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQ 172
            P W    A++ +F Y TLD +DGK ARRT +SSPLG LFDHGC +  +    + +A  L 
Sbjct: 4934 PSWVFGFASIYIFIY*TLDAVDGK*ARRTGTSSPLGQLFDHGCDSFALCFFILGVAEALN 4755

Query: 173  MGTTWRTLGFVLSGH-FVFIFATW-EYYSGSLELPLYN-GPTEGYLIGIALKLVTAVVGV 229
            +   +  + ++  G    F  + W EY++  LE    N G TE   I I L  +T + G 
Sbjct: 4754 V*AEY--VFYIFIGF*LAFFCSNWNEYHTHVLET*FCNVGVTEA*YIVIFLHFITFLFG* 4581

Query: 230  GFWN 233
              WN
Sbjct: 4580 *IWN 4569


>gb|GL983216.1| Ichthyophthirius multifiliis unplaced genomic scaffold
            scaff_1120509249703, whole genome shotgun sequence
          Length = 18039

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 34/80 (42%), Positives = 44/80 (55%)
 Frame = +1

Query: 81   LAPNXXXXXXXXXXXXSHTLFVFLCPFLVGDAPWWAMVVAALALFTYQTLDNLDGKQARR 140
            LAPN             + L +F    +  + P W  + A++++F Y TLD LDGK ARR
Sbjct: 1072 LAPNMVTFIGFLFIIS*YILMMFFDLSM*KELPSWVFLFASISVFIY*TLDALDGK*ARR 1251

Query: 141  TKSSSPLGLLFDHGCVALNV 160
            T  SSPLG LFDHGC   +V
Sbjct: 1252 TNPSSPLG*LFDHGCDCFSV 1311


>gb|GL983469.1| Ichthyophthirius multifiliis unplaced genomic scaffold
            scaff_1120509250202, whole genome shotgun sequence
          Length = 60935

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 31/66 (46%), Positives = 42/66 (63%)
 Frame = +3

Query: 108  LVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTM 167
            L  + P W  + AA   F Y TLD +DGK ARRT +SSPLG LFDHGC + +V+   + +
Sbjct: 3762 LTRELPSWVFLWAAFCSFIY*TLDAVDGK*ARRTGTSSPLG*LFDHGCDSFSVTFFLLGV 3941

Query: 168  ASILQM 173
            A  ++M
Sbjct: 3942 A*AVKM 3959


>gb|GL984040.1| Ichthyophthirius multifiliis unplaced genomic scaffold
             scaff_1120509251078, whole genome shotgun sequence
          Length = 30387

 Score = 40.4 bits (93), Expect(2) = 2e-05
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = -3

Query: 143   SSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFAT 194
             +SSPLGLL DHGC AL V++  M++++ +  G ++      L G   F   T
Sbjct: 16819 NSSPLGLLIDHGCDALIVTI*GMSLSACVGFGNSYLMYSLNLCGSVPFFITT 16664



 Score = 26.9 bits (58), Expect(2) = 2e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 197   YYSGSLELPLYNGPTEG-YLIGIALKLVTAVVGVGFWN 233
             YY+  + LPL NG  EG + IG+ + L TA +G  F N
Sbjct: 16592 YYTDIMYLPLINGAAEGCFSIGV-VYLFTAYMGFIFNN 16482


>gb|GL984009.1| Ichthyophthirius multifiliis unplaced genomic scaffold
             scaff_1120509251047, whole genome shotgun sequence
          Length = 51182

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 18/109 (16%)
 Frame = -1

Query: 143   SSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTWRTLGFVLSGHFVF------------ 190
             +SSPLGLLFDHG  ++ V +  +++A+ L  G+ + +L   + G F F            
Sbjct: 12329 NSSPLGLLFDHGVDSIIVIL*GISLATAL*YGSNYISLLIAVLGSFTFFSTTLEEVFF*Y 12150

Query: 191   -----IFATWEYYSGSLELPLYNGPTEGYLIGIAL-KLVTAVVGVGFWN 233
                  I+  ++YY+  + LP+ NG  EG   GI+L    +A+V   +W+
Sbjct: 12149 YYLNYIYIFFKYYTHIMYLPIINGAAEG-CFGISLIFFFSALVDSSWWD 12006



 Score = 34.3 bits (77), Expect = 0.30
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -1

Query: 40    YVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLVK 75
             Y+  E  + +  Y+Y G D+S++YK +++P+ NF +K
Sbjct: 12959 YLRPEDEQNINNYKYQGIDHSILYKFIMSPIANFCLK 12849


>gb|GL984180.1| Ichthyophthirius multifiliis unplaced genomic scaffold
             scaff_1120509251219, whole genome shotgun sequence
          Length = 95975

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 24/52 (46%), Positives = 32/52 (61%)
 Frame = -2

Query: 143   SSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFAT 194
             +SSPLGLLFDHGC AL VSV  +++A+ +  G T+ +     SG   F   T
Sbjct: 36670 NSSPLGLLFDHGCDALVVSV*GISLAACMGFGNTYNSYLVYASGAIPFFITT 36515


>gb|GL983199.1| Ichthyophthirius multifiliis unplaced genomic scaffold
            scaff_1120509249683, whole genome shotgun sequence
          Length = 18855

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 372  IFYVAGHCAFCMVEGIYDAINEELIVREFFFLSLSAAVHIVITVVWEVKNVL 423
            + Y+   C  C++E  Y   N   I+  +  + +    H +IT+ W VKN L
Sbjct: 1443 LMYLELDCFICVLELYYYCYNH--IIIWYLVIHIVNYFHFIITIYWVVKNYL 1294


>gb|GL983904.1| Ichthyophthirius multifiliis unplaced genomic scaffold
             scaff_1120509250940, whole genome shotgun sequence
          Length = 100953

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 240   VQNNSLFVIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFI 284
             +QN S  V +      F  L+  +  +I  IP++ FANLS  CFI
Sbjct: 70325 IQNYSENVKINYYPEFFLFLITVIIKIII-IPSINFANLS*ICFI 70194


  Database: /users/rg/didac/GENOMES/I.multifiliis_strain_G5/genome.fa
    Posted date:  Sep 29, 2011 11:36 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,472,495
Number of Sequences: 2017
Number of extensions: 462826
Number of successful extensions: 1695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1565
Number of HSP's gapped (non-prelim): 292
length of query: 457
length of database: 16,266,656
effective HSP length: 107
effective length of query: 350
effective length of database: 16,050,837
effective search space: 5617792950
effective search space used: 5617792950
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
