TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFNH01002620.1| Gregarina niphandrodes asmbl.3346, whole geno...    68   7e-12
gb|AFNH01002610.1| Gregarina niphandrodes asmbl.3336, whole geno...    48   6e-06
gb|AFNH01002745.1| Gregarina niphandrodes asmbl.3463, whole geno...    31   1.0  
gb|AFNH01002838.1| Gregarina niphandrodes asmbl.3550, whole geno...    30   1.3  
gb|AFNH01001539.1| Gregarina niphandrodes asmbl.2353, whole geno...    29   3.0  
gb|AFNH01002769.1| Gregarina niphandrodes asmbl.3488, whole geno...    28   8.6  

>gb|AFNH01002620.1| Gregarina niphandrodes asmbl.3346, whole genome shotgun sequence
          Length = 14121

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
 Frame = +2

Query: 118   VVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQMGTTW 177
             ++ ALA F YQ+LD +DGKQARRT  SS LG + DHGC AL        + S +Q+G   
Sbjct: 11417 LLTALAYFAYQSLDAVDGKQARRTGLSSALGQMMDHGCDALTTFYSAFIICSAIQLGLGS 11596

Query: 178   RTLGFVLS--GHFVFIFATWEYYSGSLELPLYN-------GPTEGYLIGIALKLVTAVVG 228
              T G +LS     +F +  +EY  G  +    +       G TEG    I L L++ +  
Sbjct: 11597 NT-GLILSMISFQLFDYGWYEYRHGVFKTSTGSSSGRWQMGVTEGQWTVIILNLISFLF- 11770

Query: 229   VGFWNQEMIE 238
              G W   +++
Sbjct: 11771 PGLWRSTLVD 11800


>gb|AFNH01002610.1| Gregarina niphandrodes asmbl.3336, whole genome shotgun sequence
          Length = 12774

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
 Frame = -3

Query: 52   YEYHGADNSLVYK-VLTPMNNFLVKLLPLWLAPNXXXXXXXXXXXXSHTLFVFLCPFLVG 110
            YEY     S  Y+ V++P   +LV+ +P  + P+               LF      ++ 
Sbjct: 1423 YEYTVPTTSPFYRGVVSPACEWLVRRIPANVTPDAITWVGL--------LFAATAVLVMP 1268

Query: 111  DAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASI 170
             + W    +AA+    Y T DNLDGK AR TK +S  G   DH   +   S+ T+ +A+ 
Sbjct: 1267 LSRW----LAAVCWVLYATADNLDGKHARATKQASVKGEFLDHVVDSATCSLLTIILAAS 1100

Query: 171  LQMGTTWRTLGFVLSGHFVFIFATWEYYS 199
             + G         L+    FI   W YYS
Sbjct: 1099 TE-GHYPPCAMLTLTVQVPFIIGCWYYYS 1016


>gb|AFNH01002745.1| Gregarina niphandrodes asmbl.3463, whole genome shotgun sequence
          Length = 22426

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 39/177 (22%), Positives = 67/177 (37%), Gaps = 10/177 (5%)
 Frame = +2

Query: 187  HFVFIFATWEYYSGSLELPLYNGPTEGY-LIGIALKLVTAVVGVGFWNQEMIEGVQNNSL 245
            +FVF   T+ Y + SL       P   Y L  +AL  +  V+  G W+Q++   +     
Sbjct: 6431 NFVFCMPTYYYAAFSLFSGQKTFPESTYQLFNVALTQLP-VICYGIWDQDVSRELSMTFP 6607

Query: 246  FVIVTMISSCF----TLLVKYVGGL-----IFCIPAVRFANLSMFCFITSVRNALHAVRL 296
             +  T I   F    ++L  ++ G+     +F IP + F+ L++    T           
Sbjct: 6608 QLYKTGIEDAFMRWRSILAWFLTGIWHSVCVFFIPVISFSGLNITDITT----------- 6754

Query: 297  NQDSVLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLHLM 353
                                       Y P+D F+    MFL ++ ++N KL+L  M
Sbjct: 6755 ---------------------------YMPNDFFTVSTVMFLQVMLVVNGKLLLETM 6844


>gb|AFNH01002838.1| Gregarina niphandrodes asmbl.3550, whole genome shotgun sequence
          Length = 9504

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 310  PFVVINTLAGLWALYSPSDIFSTHPRMFLW 339
            P +++ T A LW L + SD  +TH R  LW
Sbjct: 1571 PHLLVTTPAALWRLAARSDAHTTHARHPLW 1660


>gb|AFNH01001539.1| Gregarina niphandrodes asmbl.2353, whole genome shotgun sequence
          Length = 19399

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
 Frame = -3

Query: 204   LPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVT------MISSCFT 257
             LPL++ P + + + ++L ++ AV+         +  +  +S+  ++T      +IS+   
Sbjct: 16934 LPLFSFPLQVFPLKLSLAVIPAVMSA-------VLAIVISSVLPMITPTVLPIVISAILP 16776

Query: 258   LLVKYVGGLIFCIPAVRFANLSMFC-FITSVRNALHAVRLNQDSVLVAFTRLLPFVVINT 316
             +++  +      IP V  A +SM    +TSV      VR    SV     R+ PF V+ +
Sbjct: 16775 IVIPSIA-----IPTVISAIVSMAVPGLTSVAIFGEPVR----SVRFTSVRVFPFPVVVS 16623

Query: 317   LAGLWALYSPSDIFSTHPRMFLWMLG 342
             L G+  L +   +F      F W  G
Sbjct: 16622 LCGVLYLAAFPVVFGDFAGRFAWSAG 16545


>gb|AFNH01002769.1| Gregarina niphandrodes asmbl.3488, whole genome shotgun sequence
          Length = 7190

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 361 EYHPFRKTLVPIFYVAGHCAFCM 383
           E  P R+ + P++   GH AFCM
Sbjct: 414 EARPTRRAVGPVYLADGHSAFCM 482


  Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa
    Posted date:  Sep 29, 2011 11:25 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,664,048
Number of Sequences: 3680
Number of extensions: 132241
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 389
length of query: 457
length of database: 5,120,956
effective HSP length: 98
effective length of query: 359
effective length of database: 4,760,316
effective search space: 1708953444
effective search space used: 1708953444
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
