TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_101                                                          143   6e-34
scaffold_23                                                           143   6e-34
scaffold_2                                                             95   2e-19
scaffold_17                                                            33   1.5  
scaffold_11                                                            33   1.5  
scaffold_7                                                             32   3.2  
scaffold_9                                                             31   4.2  
scaffold_4                                                             31   4.2  
scaffold_6                                                             31   5.5  
scaffold_22                                                            30   9.4  

>scaffold_101 
          Length = 134375

 Score =  143 bits (361), Expect = 6e-34
 Identities = 127/437 (29%), Positives = 210/437 (48%), Gaps = 35/437 (8%)
 Frame = -3

Query: 34    STYFGKYVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLVK-LLPLWLAPNXXXXXXX 91
             ST  G Y++++  ++++ YEY GADNSL+Y+ VL+P+  FLV  ++P  +APN       
Sbjct: 52263 STSGGYYLNEDARKQIQHYEYKGADNSLLYQYVLSPLAAFLVNNVVPKSMAPNTVTTIGL 52084

Query: 92    XXXXXSHTLFVFLCPFLV------------------GDAPWWAMVVAALALFTYQTLDNL 133
                  +++ + +  P L                      P W  +   +AL  YQTLDN+
Sbjct: 52083 VLMITAYSSYWWYVPTLEITTNDDGNNNDNDEESSRSYPPRWIFLWNGIALLAYQTLDNM 51904

Query: 134   DGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQMGTT----WRTLGFVLSGHFV 189
             DGKQARRT SSSPLGLLFDHGC A+N   G++ +  I+ M  T       +  ++ G FV
Sbjct: 51903 DGKQARRTGSSSPLGLLFDHGCDAINSIFGSVNV--IIGMNLTPSENMFEIWLLIFGPFV 51730

Query: 190   -FIFATWE-YYSGSLELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFV 247
              F  ATWE +Y+G L +P+ NGP+EG +    L  ++  +G  +W        Q +    
Sbjct: 51729 MFYIATWEQFYTGELIMPIINGPSEGVVGTAILSFISYWLGSQYWQ-------QTDWFDT 51571

Query: 248   IVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMF--CFITSVRNALHAVRLNQDSVLVAF 305
               ++  + F+L ++       C   V F  L +F    + S+  A    R  QD      
Sbjct: 51570 FDSIFPTTFSLQLRN------CDFIVIFVALGIFQEIILKSIAVAQKYKRSGQD------ 51427

Query: 306   TRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPF 365
               L+P  +++    +  L  P+  F+  PR  L +   L  ++   LML+H+  + ++P+
Sbjct: 51426 --LVPLFILSFCYLIIGLIDPNVWFAI-PRTSLHLAMTLFVEMSTELMLSHVTAQSFNPW 51256

Query: 366   RKTLVPIFYVAGHCAFCMVEGIYDAINEELIVREFFFLSLSAAVHIVIT-----VVWEVK 420
             R  +VP+  +           I+ AI     V +++ +  + ++   +T     V+ E+ 
Sbjct: 51255 RWQVVPLIGIT----------IWVAIFGNSEVLQYWIIGYTWSMGAYLTMKCVCVINEIC 51106

Query: 421   NVLGVSVFTI--PHSSK 435
             +VL +  F I  PH  K
Sbjct: 51105 DVLEIWCFDIVTPHYKK 51055


>scaffold_23 
          Length = 885465

 Score =  143 bits (361), Expect = 6e-34
 Identities = 128/437 (29%), Positives = 209/437 (47%), Gaps = 35/437 (8%)
 Frame = -2

Query: 34     STYFGKYVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLVK-LLPLWLAPNXXXXXXX 91
              ST  G Y++++  +++  YEY GADNSL+Y+ VL+P+  FLV  ++P  +APN       
Sbjct: 656672 STSGGYYLNEDARKQIHHYEYKGADNSLLYQYVLSPLAAFLVNNVVPKSMAPNTVTTIGL 656493

Query: 92     XXXXXSHTLFVFLCPFLV------------------GDAPWWAMVVAALALFTYQTLDNL 133
                   +++ + +  P L                      P W  +   +AL  YQTLDN+
Sbjct: 656492 VLMITAYSSYWWYVPTLEITTNDDGNNNDNDEESPRSYPPRWIFLWNGIALLAYQTLDNM 656313

Query: 134    DGKQARRTKSSSPLGLLFDHGCVALNVSVGTMTMASILQMGTT----WRTLGFVLSGHFV 189
              DGKQARRT SSSPLGLLFDHGC A+N   G++ +  I+ M  T       +  ++ G FV
Sbjct: 656312 DGKQARRTGSSSPLGLLFDHGCDAINSIFGSVNV--IIGMNLTPSENMFEIWLLIFGPFV 656139

Query: 190    -FIFATWE-YYSGSLELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFV 247
               F  ATWE +Y+G L +P+ NGP+EG +    L  ++  +G  +W        Q +    
Sbjct: 656138 MFYIATWEQFYTGELIMPIINGPSEGVVGTAILSFISYWLGSQYWQ-------QTDWFDT 655980

Query: 248    IVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMF--CFITSVRNALHAVRLNQDSVLVAF 305
                ++  + F+L ++       C   V F  L +F    + S+  A    R  QD      
Sbjct: 655979 FDSIFPTTFSLQLRN------CDFIVIFVALGIFQEIILKSIAVAQKYKRSGQD------ 655836

Query: 306    TRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPF 365
                L+P  V++    +  L  P+  F+  PR  L +   L  ++   LML+H+  + ++P+
Sbjct: 655835 --LVPLFVLSFCYLIVGLIDPNVWFAI-PRTSLHLAMTLFVEMSTELMLSHVTAQSFNPW 655665

Query: 366    RKTLVPIFYVAGHCAFCMVEGIYDAINEELIVREFFFLSLSAAVHIVIT-----VVWEVK 420
              R  +VP+  +           I+ AI     V +++ +  + ++   +T     V+ E+ 
Sbjct: 655664 RWQVVPLIGIT----------IWVAIFGNSEVLQYWIIGYTWSMGAYLTMKCVCVINEIC 655515

Query: 421    NVLGVSVFTI--PHSSK 435
              +VL +  F I  PH  K
Sbjct: 655514 DVLEIWCFDIVTPHYKK 655464


>scaffold_2 
          Length = 3822992

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 100/419 (23%), Positives = 177/419 (42%), Gaps = 16/419 (3%)
 Frame = -1

Query: 41      VSQEGSEKLRTYEYHGADNSLVYKVLTPMNNFLVKLLPLWLAPNXXXXXXXXXXXXSHTL 100
               ++ +G E +  ++Y     + +  VL P+   L +LLP+WLAPN            ++ +
Sbjct: 3439541 LTDQGIENIANHQYKPGQYTYLDNVLNPIWTALTELLPIWLAPNMVTFIGALHCGVAYGV 3439362

Query: 101     FVFLCPFLVGDAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCVAL-N 159
                 +         P W + +       Y T D +DGKQARRTK SSPLG LFDHG   L N
Sbjct: 3439361 TWYYSSNFDQTVPNWVVFLNGYCTIAYYTFDCMDGKQARRTKQSSPLGQLFDHGFDCLCN 3439182

Query: 160     VSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFATW-EYYSGSLELPLYN-GPTE-GYLI 216
               ++  +      L +G T+  + F  S  F F  A W EYY+G L   + N G TE  Y +
Sbjct: 3439181 LAHISCQAGGYLLLGGTYYFMAFQGSLFFAFFMAQWEEYYTGELPHAMGNFGVTETNYGL 3439002

Query: 217     GIAL------------KLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSCFTLLVKYVG 264
               G+              +L T+++G     Q +++ +  +  + I T I S   + +K  G
Sbjct: 3439001 GLFAIYNSFLGKHGREQLWTSLIGDINPIQSILQQISIH--YTIPTYILS---MELKQFG 3438837

Query: 265     GLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLLPFVVINTLAGLWALY 324
                  + I ++     S++  +T  +   + +  +  S L+      PF++     G + L 
Sbjct: 3438836 ISCWFIASIVLVLGSLYRVLTHEKVTTNKLWYSAISKLIT-----PFLI---ACGPFIL- 3438684

Query: 325     SPSDIFSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPFRKTLVPIFYVAGHCAFCMV 384
                P  +  T  R     +GLL S L + ++   +  + Y   +   +P ++V     +   
Sbjct: 3438683 -PWHVIQTETRSISICMGLLMSYLTMKMICFSMAKQTYASIQIEAIPYWFV---LVWIRY 3438516

Query: 385     EGIYDAINEELIVREFFFLSLSAAVHIVITVVWEVKNVLGVSVFTIPHSSKFKLKTNSK 443
               +         +++    F      +    + + ++   L ++ FTI H    K K   K
Sbjct: 3438515 DTNITNRGATILLSVLCFFYTYKLISWSKSAIHQITTRLDINCFTIKHKKV*KRKRKEK 3438339



 Score = 31.2 bits (69), Expect = 4.2
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -3

Query: 246     FVIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDSVLVAF 305
               F+I   I+SCF  L KY+         + FANL +  F T   + LH       S+    
Sbjct: 2674032 FLIDDSIASCFHAL-KYI---------L*FANLKIRTFFTFHNSQLHNTNNTNSSIKYRS 2673883

Query: 306     TRLLPFVVINTLAGLWALY 324
                R +PF++   +  +  +Y
Sbjct: 2673882 IRCIPFLIFLIMGAVHGVY 2673826


>scaffold_17 
          Length = 1246618

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = -1

Query: 188    FVFIFATWEYYSGSLELPLY-NGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLF 246
              ++   ++++ Y   L L +Y +G  +G ++ +A  +V AV+G  F+N  ++   +N+ + 
Sbjct: 383314 YIIYLSSFQRYHFVLFLEVYLDGGDDGVVVAVAAVVVAAVIGDDFFN--LLRKSRNSGVA 383141

Query: 247    VIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCF 283
              V V ++       V  +G ++F   A  F  + +F F
Sbjct: 383140 VFVAVV-------VAVLGLVVFLRLACTFVVVDVFSF 383051


>scaffold_11 
          Length = 1700871

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
 Frame = -2

Query: 245     LFVIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQDS---- 300
               LF  V +I S F LLV +   L+ C P + F  LS F ++ S    +  + L   S    
Sbjct: 1199471 LFSSVLVIVSLFLLLVSFCLILLSCRPRLSFHYLSFFSWLLSCHLVVSFLLLVVPSDLQF 1199292

Query: 301     -VLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRM-FLWMLGLLNSKLVLHLMLAHL 357
                +L  F+ +L  V +  L   + L     + S  PR+ F +++   +  L  HL+++ L
Sbjct: 1199291 LLLFLFSSVLVIVTLFLLLVSFCLI----LLSCRPRLSFHYLVSFFSWLLSCHLVVSFL 1199127


>scaffold_7 
          Length = 2770240

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = +3

Query: 255     CFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQ 298
               C T L+      +FCI  + F NLS FCF TS  N   A R +Q
Sbjct: 1831290 CLTRLLLREFQCLFCISII-FQNLSNFCFDTSFDNRRRACRHSQ 1831418



 Score = 30.4 bits (67), Expect = 7.2
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 270     IPAVRFANLSMFCFITSVRNALHAVRLNQDSVLVAFTRLLPFVVINTLAGLWAL 323
               +PA R A+  M C I   R +  + +LN  SVL+   RL+    +N + GL AL
Sbjct: 1161602 VPAAR-ASFDMCCLIVFARTSALSTQLNSKSVLINSGRLMQ-SAMNKITGLRAL 1161757


>scaffold_9 
          Length = 2734635

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 53      EYHGADNSLVYKVLTPMNNFLVKLLPLWLAPN 84
               +YH  +  L+Y   + + NF++ L PLW+  N
Sbjct: 1768181 QYHHHNRVLLYYTFSVLTNFIIPLTPLWIINN 1768086


>scaffold_4 
          Length = 3206981

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 42      SQEGSEKLRTYEYHGADNSLVYKVLTPMNNF 72
               S+E SEK + Y Y G+DNS VY ++  MN+F
Sbjct: 1410293 SREESEK-KVYSY*GSDNSGVYWIIWDMNSF 1410204


>scaffold_6 
          Length = 2967614

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -2

Query: 236     MIEGVQNNSLFVIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHA 293
               +IEGV  + LFV+V + SS  +       G IFC   V+ A L  +C   S ++  HA
Sbjct: 2454547 VIEGVSLS*LFVVVVVFSSSVSF---STSGTIFC-SLVQSAYLDTYCLTVSGKSPPHA 2454386


>scaffold_22 
          Length = 950298

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 247    VIVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVR 288
              V+V    SC   L+   G +   IP + F  +S  CF TSVR
Sbjct: 518041 VLVEPPPSCCNTLISKTGIIFHSIPVLSFLQIS*TCFETSVR 517916


  Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa
    Posted date:  Sep 29, 2011 10:40 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,742,220
Number of Sequences: 271
Number of extensions: 722179
Number of successful extensions: 4761
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4105
Number of HSP's gapped (non-prelim): 1761
length of query: 457
length of database: 26,846,802
effective HSP length: 110
effective length of query: 347
effective length of database: 26,816,992
effective search space: 9305496224
effective search space used: 9305496224
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)
